View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18833_low_14 (Length: 258)
Name: NF18833_low_14
Description: NF18833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18833_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 243
Target Start/End: Original strand, 12886308 - 12886541
Alignment:
| Q |
9 |
acatcatcaacttgcaaattatatttttccctaaatattttccaaccaccacccacacaagatttatctttggtatcatgatacctcaaactcacttcca |
108 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
12886308 |
acatcgtcaacttgcaaattatatttttccctaaatattttccaaccaccacccacacaagacttatctttggtatcataatacctcaaactcacttcca |
12886407 |
T |
|
| Q |
109 |
cactcctttcattaccaacccttattgttgcagttcctttaaaattgttcaagtgttctcttgaaaacttacttggtacccactgtttcaaaatcatagt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
12886408 |
cactcctttcattaccaacccttattgttgcagttcctttaaaattgttcaagtgttctcttgaaaacttacttggtacccactgtttc-aaatcatagt |
12886506 |
T |
|
| Q |
209 |
ttattagagatattaattaaagcttaaattcatag |
243 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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|
| T |
12886507 |
ttattagagatattaattaaagcttaaattcatag |
12886541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 9 - 238
Target Start/End: Complemental strand, 12955454 - 12955226
Alignment:
| Q |
9 |
acatcatcaacttgcaaattatatttttccctaaatattttccaaccaccacccacacaagatttatctttggtatcatgatacctcaaactcacttcca |
108 |
Q |
| |
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||||| ||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
12955454 |
acatcgtcaacttgcaaattatacttttccctgaatattttccaaccaccacccaaacaagatttttctttggtatcataatacctcaaactcacttcca |
12955355 |
T |
|
| Q |
109 |
cactcctttcattaccaacccttattgttgcagttcctttaaaattgttcaagtgttctcttgaaaacttacttggtacccactgtttcaaaatcatagt |
208 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||||| | |||||||||||||||||||| || ||||| |||||||||| |||| || || |
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| T |
12955354 |
cactcctttctttaccaacccttattgttgcagttccattaaaattttccaagtgttctcttgaaaactcacgtggtaaccactgtttc-aaataatggt |
12955256 |
T |
|
| Q |
209 |
ttattagagatattaattaaagcttaaatt |
238 |
Q |
| |
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|||||||||||||||||||||||| ||||| |
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|
| T |
12955255 |
ttattagagatattaattaaagctaaaatt |
12955226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 9 - 238
Target Start/End: Complemental strand, 12949815 - 12949587
Alignment:
| Q |
9 |
acatcatcaacttgcaaattatatttttccctaaatattttccaaccaccacccacacaagatttatctttggtatcatgatacctcaaactcacttcca |
108 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| | |||||| || ||| |||||||||||||||||||| |
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| T |
12949815 |
acatcgtcaacttgcaaattatatttttccctgaatattttccaaccaccacccaaacaagatctttctttgttaccataatacctcaaactcacttcca |
12949716 |
T |
|
| Q |
109 |
cactcctttcattaccaacccttattgttgcagttcctttaaaattgttcaagtgttctcttgaaaacttacttggtacccactgtttcaaaatcatagt |
208 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||| || ||||| |||||||||| |||| || || |
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| T |
12949715 |
cactcctttcattatcaacccttattgttgcagttccattaaaatctatcaagtgttctcttgaaaactcacatggtaaccactgtttc-aaataatggt |
12949617 |
T |
|
| Q |
209 |
ttattagagatattaattaaagcttaaatt |
238 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |
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|
| T |
12949616 |
ttattagagatattaattaaagctaaaatt |
12949587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 9 - 243
Target Start/End: Original strand, 12922803 - 12923036
Alignment:
| Q |
9 |
acatcatcaacttgcaaattatatttttccctaaatattttccaaccaccacccacacaagatttatctttgg-tatcatgatacctcaaactcacttcc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| || |||||| ||||| ||||||||||||| |
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|
| T |
12922803 |
acatcatcaacttgcaaattatatttttccctaaatattttccaaccaccacccacacaagaatt-tctgcgggtatcataataccccaaactcacttcc |
12922901 |
T |
|
| Q |
108 |
acactcctttcattaccaacccttattgttgcagttcctttaaaattgttcaagtgttctcttgaaaacttacttggtacccactgtttcaaaatcatag |
207 |
Q |
| |
|
||| | | || |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| | |||||| || ||||||| ||||||| |
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|
| T |
12922902 |
acagccatgtccttaccaacccttattgttgcagttccattaaaatctttcaagtgttctcttgaaaactcaattggtatcccctgtttc-aaatcatgt |
12923000 |
T |
|
| Q |
208 |
tttattagagatattaattaaagcttaaattcatag |
243 |
Q |
| |
|
||||||||||||||| ||||||| | ||||| |||| |
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|
| T |
12923001 |
tttattagagatattgattaaaggtaaaattaatag |
12923036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 9 - 243
Target Start/End: Original strand, 12915725 - 12915958
Alignment:
| Q |
9 |
acatcatcaacttgcaaattatatttttccctaaatattttccaaccaccacccacacaagatttatctttggtatcatgatacctcaaactcacttcca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||| |||||| |||||||||| || | |||| | | |||| ||| |||||||||||||||||||| |
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|
| T |
12915725 |
acatcatcaacttgcaaattatatttttgtctgaataatttccatccaccacccataccatattttttctgggtaccataatacctcaaactcacttcca |
12915824 |
T |
|
| Q |
109 |
cactcctttcattaccaacccttattgttgcagttcctttaaaattgttcaagtgttctcttgaaaacttacttggtacccactgtttcaaaatcatagt |
208 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| | ||||| |||||||||| |||| || || |
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|
| T |
12915825 |
cactcctgtcattaccaacccttattgttgcagttccattaaaatctttcaagtgttctcttgaaaactcaaatggtatccactgtttc-aaataatggt |
12915923 |
T |
|
| Q |
209 |
ttattagagatattaattaaagcttaaattcatag |
243 |
Q |
| |
|
|||||||| ||| ||||||||||| ||||| |||| |
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| T |
12915924 |
ttattagatataataattaaagctaaaattaatag |
12915958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 9 - 243
Target Start/End: Complemental strand, 12941777 - 12941544
Alignment:
| Q |
9 |
acatcatcaacttgcaaattatatttttccctaaatattttccaaccaccacccacacaagatttatctttggtatcatgatacctcaaactcacttcca |
108 |
Q |
| |
|
||||||||||||| |||||||||||||| || |||| |||||| ||||||| | || | ||| | |||||| ||| |||||||||||||| || || |
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|
| T |
12941777 |
acatcatcaactttcaaattatatttttgtctgaataatttccatccaccacttataccatgttttttcttggtaccataatacctcaaactcaatttca |
12941678 |
T |
|
| Q |
109 |
cactcctttcattaccaacccttattgttgcagttcctttaaaattgttcaagtgttctcttgaaaacttacttggtacccactgtttcaaaatcatagt |
208 |
Q |
| |
|
|| ||||||| ||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||| || ||||| |||||||||| |||| || || |
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|
| T |
12941677 |
cagtcctttctttaccaacccttactgttgcagtccctttaaaatcgttcaagtgttctcttgaaaactcacatggtaaccactgtttc-aaataatggt |
12941579 |
T |
|
| Q |
209 |
ttattagagatattaattaaagcttaaattcatag |
243 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||| |
|
|
| T |
12941578 |
ttattagagatattaattaaagctaaaattaatag |
12941544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 12192460 - 12192535
Alignment:
| Q |
155 |
gttcaagtgttctcttgaaaacttacttggtacccactgtttcaaaatcatagtttattagagatattaattaaagc |
231 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| || ||||||| || ||| ||||||||||||||||||||||||| |
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|
| T |
12192460 |
gttcaagtattctcttgaaaacttacttggtatcctctgtttc-aattcaaggtttattagagatattaattaaagc |
12192535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 231
Target Start/End: Complemental strand, 12879131 - 12879056
Alignment:
| Q |
155 |
gttcaagtgttctcttgaaaacttacttggtacccactgtttcaaaatcatagtttattagagatattaattaaagc |
231 |
Q |
| |
|
|||||||| ||||||||||||||| |||||| |||||||||| || || | |||| |||||||||||||||||||| |
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|
| T |
12879131 |
gttcaagtattctcttgaaaactttgttggtatccactgtttc-aattcttggtttgttagagatattaattaaagc |
12879056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 199
Target Start/End: Complemental strand, 12989190 - 12989135
Alignment:
| Q |
144 |
cctttaaaattgttcaagtgttctcttgaaaacttacttggtacccactgtttcaa |
199 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| |||||||||| | ||||||||| |
|
|
| T |
12989190 |
cctttaaatttgttcaagtgtgctcttgaaaaattacttggtatcgcctgtttcaa |
12989135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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