View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18833_low_15 (Length: 241)
Name: NF18833_low_15
Description: NF18833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18833_low_15 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 105 - 241
Target Start/End: Original strand, 1458210 - 1458346
Alignment:
| Q |
105 |
ataattttatgcagaaatcaccacaaaattgagttcttgtcaatgaatgaactaagattaagataagaattacaattaaagaagaaatacacaagaattt |
204 |
Q |
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| T |
1458210 |
ataattttatgcagaaaccaccacaaaattgagttcttgtcaatgaatgaactaagattaagataagaattacaattaaagaagaaatacacaagaattt |
1458309 |
T |
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| Q |
205 |
ttgtgtttcagcttagagcaaggaactctaagctttc |
241 |
Q |
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| T |
1458310 |
ttgtgtttcagcttagagcaaggaactctaagctttc |
1458346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 105 - 241
Target Start/End: Original strand, 2427917 - 2428053
Alignment:
| Q |
105 |
ataattttatgcagaaatcaccacaaaattgagttcttgtcaatgaatgaactaagattaagataagaattacaattaaagaagaaatacacaagaattt |
204 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2427917 |
ataattttatgcagaaaccaccacaaaattgagttcttgtcaatgaatgaactaagattaagataagaattacaattaaagaagaaatacacaagaattt |
2428016 |
T |
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| Q |
205 |
ttgtgtttcagcttagagcaaggaactctaagctttc |
241 |
Q |
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| T |
2428017 |
ttgtgtttcagcttagagcaaggaactctaggctttc |
2428053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 1458069 - 1458158
Alignment:
| Q |
19 |
tgtatgtcatgctctctctttcattccattattaatattttgtcttggaatttgaagaaatggttgcttttgaaatttattttgaaataa |
108 |
Q |
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| T |
1458069 |
tgtatgtcatgctctctctttcattccattattaacattttgtcttggaatttgaagaaatggttgcttttgaaatttattttgaaataa |
1458158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 2427776 - 2427865
Alignment:
| Q |
19 |
tgtatgtcatgctctctctttcattccattattaatattttgtcttggaatttgaagaaatggttgcttttgaaatttattttgaaataa |
108 |
Q |
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| T |
2427776 |
tgtatgtcatgctctctctttcattccattattaacattttgtcttggaatttgaagaaatggttgcttttgaaatttattttgaaataa |
2427865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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