View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18833_low_3 (Length: 511)
Name: NF18833_low_3
Description: NF18833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18833_low_3 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 16 - 511
Target Start/End: Complemental strand, 29610252 - 29609757
Alignment:
| Q |
16 |
atgagagacaagttactattaccaagaaatgaaagtagtaaaaggaagcacaaatgtttatagtaatagtgtaccaatggtgaaatctttaatggcagaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29610252 |
atgagagacaagttactattaccaagaaatgaaagtagtaaaaggaagcacaaatgttgatagtaatagtgtaccaatggtgaaatctttaatggcagaa |
29610153 |
T |
|
| Q |
116 |
ggagtagtaacagaacgttcaatttgggtcatctgaccaatcttctctttcaatgtcataagagaaagaaggtttttgatgcgatcttcaaccgtttcag |
215 |
Q |
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| T |
29610152 |
ggagtagtaacagaacgttcaatttgggtcatctgaccaatcttctctttcaatgtcataagagaaagaaggtttttgatgcgatcttcaaccgtttcag |
29610053 |
T |
|
| Q |
216 |
tgggattcctatacacggaatccatgtatctgacttagttcttgctatattcactgtgatgcttgttttcagtagctgtttcaacagatctgatggctaa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29610052 |
tgggattcctatacacggaatccatgtatctgacttagttcttgctatattcactgtgatgcttgttttcagtagctgtttcaacagatctgatgtctaa |
29609953 |
T |
|
| Q |
316 |
atggtgaaatggtacaaccttaatttatgaacttagttccagggcacgcacttttattatacattaaaaaacaaaactttcggctgcatgtaagtattta |
415 |
Q |
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| T |
29609952 |
atggtgaaatggtacaaccttaatttatgaacttagttccagggcacgcacttttattatacattaaaaaacaaaactttcggctgcatgtaagtattta |
29609853 |
T |
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| Q |
416 |
attactgaagttagtgacttttttctggtccaccacctcaaaatgtggttcaaggtgaaaagttaatattaacaaaggggaatgcaggcgtgaagc |
511 |
Q |
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| T |
29609852 |
attactgaagttagtgacttttttctggtccaccacctcaaaatgtggttcaaggtgaaaagttaatattaacaaaggggaatgcaggcgtgaagc |
29609757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 81 - 490
Target Start/End: Original strand, 29584720 - 29585132
Alignment:
| Q |
81 |
atagtgtaccaatggtgaaatctttaatggcagaaggagtagtaacagaacgttcaatttgggtcatctgaccaatcttctctttcaatgtcataagaga |
180 |
Q |
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|||| |||||||||| ||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
29584720 |
atagagtaccaatggcgaagtcttttatggcagaaggagtagtaacagagcgttcaatttgagtcatctgaccaatcttctctttcaaagtcataagaga |
29584819 |
T |
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| Q |
181 |
aagaaggtttttgatgcgatcttcaaccgtttcagtgggattcctatacacggaatccatgtatctgacttagttcttgctatattcactgtgatgcttg |
280 |
Q |
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| T |
29584820 |
aagaaggtttttgattcgagcttcaaccggttcagcgggattcatatacacagaatccatgcaactgactgagttcttgctataaacactgtgatgcttg |
29584919 |
T |
|
| Q |
281 |
ttttcagtagctgtttcaacagatctgatggctaaatggtgaaatggtacaaccttaatttatgaacttagttcca--gggcacgcacttttattataca |
378 |
Q |
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| T |
29584920 |
tttgcagttactgttactgcagatttgatatccaaatggtgaaatggaacaactctaatttatgaacttagcctcagggggaacgtactttgattaaaca |
29585019 |
T |
|
| Q |
379 |
tt---aaaaaacaaaactttcggctgcatgtaagtatttaattactgaagttagtgacttttttctggtccaccacctcaaaatgtggttcaaggtgaaa |
475 |
Q |
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|| | |||| |||||||||||||||||||||||||| ||||||| |||||||||| |||| |||||||||| ||||||| |||||||| ||||||| |
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| T |
29585020 |
ttttaataaaaagaaactttcggctgcatgtaagtatttgattactggagttagtgac--ttttatggtccaccatctcaaaaggtggttcatggtgaaa |
29585117 |
T |
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| Q |
476 |
agttaatattaacaa |
490 |
Q |
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| T |
29585118 |
aattaatatgaacaa |
29585132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 87 - 162
Target Start/End: Original strand, 25130239 - 25130314
Alignment:
| Q |
87 |
taccaatggtgaaatctttaatggcagaaggagtagtaacagaacgttcaatttgggtcatctgaccaatcttctc |
162 |
Q |
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||||||||| || ||||| ||| |||||||||||| ||||| |||||||||||| |||| |||||||||||||| |
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| T |
25130239 |
taccaatggagaggtctttgatgacagaaggagtagcaacagtgcgttcaatttggatcatttgaccaatcttctc |
25130314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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