View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18833_low_5 (Length: 433)
Name: NF18833_low_5
Description: NF18833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18833_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 34730200 - 34730615
Alignment:
| Q |
1 |
tgtatcatatgccttaataagggggacgctaccttaattatctgaagactcaggctcttaaatctgcctttaaccatatcgagtccccatcccacaactc |
100 |
Q |
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| T |
34730200 |
tgtatcatatgccttaataaggggtacgctaccttaattatctgaagactcaggctcttaaatctgcctttaactatatcgagtccccatcccacaactc |
34730299 |
T |
|
| Q |
101 |
taatataggaataccctttctgacaataagtaattatcaagaataacatgaccgttactttgcatggttattataaaattgttacagctagaactcttga |
200 |
Q |
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| T |
34730300 |
taatataggaataccctttctgacaataagtaattatcaagaataacatgaccgttactttgcatggttattataaaattgttacagctagaactcttga |
34730399 |
T |
|
| Q |
201 |
acacgcttaacttattcatgttacagaagattaagcctctttaccatcgaaacatatgacagttaaaaatccaataagattcatgaaataaaagaaaaaa |
300 |
Q |
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| T |
34730400 |
acacgcttaacttattcatgttacagaagattaagcctctttaccatcgaaacgtatgacagttaaaaatccaataagattcatgaaataaaagaaaaaa |
34730499 |
T |
|
| Q |
301 |
tgagcagaacttataagagcttaaaaagataggaaattgtagcgaattaagaagttctgtcacataacatttaatgtccattgtaacttgcaaggtaaac |
400 |
Q |
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| T |
34730500 |
tgagcagaacttataagagcttaaaaagataggaaattgtagcgaattaagaagttctgtcacataacatttaatgtccattgtaacttgcaaggtaaac |
34730599 |
T |
|
| Q |
401 |
tcttgcataaataagc |
416 |
Q |
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| T |
34730600 |
tcttgcgtaaataagc |
34730615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 142 - 395
Target Start/End: Original strand, 38795662 - 38795912
Alignment:
| Q |
142 |
aataacatgaccgttactttgcatggttattataaaattgttacagctagaactcttgaacacgcttaacttattcatgttacagaagattaagcctctt |
241 |
Q |
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||||||||||| ||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38795662 |
aataacatgactattactttgcatggttcttatgaaattgtcacagctagaactcttgaacacgcttaacttattcatgttacagaagattaagcctctt |
38795761 |
T |
|
| Q |
242 |
taccatcgaaacatatgacagttaaaaatccaataagattcatgaaataaaagaaaaaatgagcagaacttataagagcttaaaaagataggaaattgta |
341 |
Q |
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| T |
38795762 |
taccatcaaaacgtgtgacagttaaaaatccaataagttccatgaaataaaataaaagttgagcagaacatacaaggggttcaaaagacaggaaattgta |
38795861 |
T |
|
| Q |
342 |
gcgaattaagaagttctgtcacataacatttaatgtccattgtaacttgcaagg |
395 |
Q |
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| T |
38795862 |
gcaagtt---aagttctgccacatcacatttaatgttcattgtaacttgcaagg |
38795912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 155 - 395
Target Start/End: Original strand, 38610889 - 38611126
Alignment:
| Q |
155 |
ttactttgcatggttattataaaattgttacagctagaactcttgaacacgcttaacttattcatgttacagaagattaagcctctttaccatcgaaaca |
254 |
Q |
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| T |
38610889 |
ttactttgcatggttattatgaaattgtctcagctagaactcttgaacatgcttaacttattcatgttatagaagattaagcctctttagcatcgaaacg |
38610988 |
T |
|
| Q |
255 |
tatgacagttaaaaatccaataagattcatgaaataaaagaaaaaatgagcagaacttataagagcttaaaaagataggaaattgtagcgaattaagaag |
354 |
Q |
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| T |
38610989 |
tgtgacagttaaaaatccaataagatccatgagatgaaagaaaagttgagcagaacatacaaggggttcaaaagataggaaattgtagcaagtt---aag |
38611085 |
T |
|
| Q |
355 |
ttctgtcacataacatttaatgtccattgtaacttgcaagg |
395 |
Q |
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| T |
38611086 |
ttctgccacgtcacatttaatgttcactgtagcttgcaagg |
38611126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 231 - 416
Target Start/End: Original strand, 34726214 - 34726398
Alignment:
| Q |
231 |
ttaagcctctttaccatcgaaacatatgacagttaaaaatccaataagattcatgaaataaaagaaaaaatgagcagaacttataagagcttaaaaagat |
330 |
Q |
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|||||| ||||||||||| | | ||||||| || |||||||||| |||| ||||||||||| |||||| ||| ||||||||| ||||| |||||||||| |
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| T |
34726214 |
ttaagcatctttaccatccagatgtatgacaattgaaaatccaatcagatccatgaaataaatgaaaaa-tgaacagaacttacaagaggttaaaaagat |
34726312 |
T |
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| Q |
331 |
aggaaattgtagcgaattaagaagttctgtcacataacatttaatgtccattgtaacttgcaaggtaaactcttgcataaataagc |
416 |
Q |
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| T |
34726313 |
aggcaattgtaggatattaagaagttctgttgcattacattcaatgtctcatgtaacttgcaaggcaaactcttgagtaaataagc |
34726398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 148 - 243
Target Start/End: Original strand, 34721014 - 34721110
Alignment:
| Q |
148 |
atgaccgttactttgcatggttattataaaattgttacagctagaactcttgaacacgc-ttaacttattcatgttacagaagattaagcctcttta |
243 |
Q |
| |
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|||||| ||||| |||||||||||||| |||||| ||| ||||||||||||||||| || ||| ||||||| ||||||| | |||||||| |||||| |
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| T |
34721014 |
atgaccattactctgcatggttattatgaaattgatactgctagaactcttgaacatgctttatcttattcttgttacaaaggattaagcatcttta |
34721110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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