View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18833_low_6 (Length: 432)

Name: NF18833_low_6
Description: NF18833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18833_low_6
NF18833_low_6
[»] chr3 (17 HSPs)
chr3 (150-414)||(30487072-30487338)
chr3 (150-396)||(30518260-30518505)
chr3 (9-73)||(30487415-30487479)
chr3 (294-365)||(30505092-30505163)
chr3 (16-70)||(30505399-30505453)
chr3 (17-57)||(30489577-30489617)
chr3 (276-382)||(30520060-30520167)
chr3 (17-57)||(30520396-30520436)
chr3 (273-353)||(30521956-30522041)
chr3 (16-63)||(30516171-30516217)
chr3 (19-73)||(30487725-30487779)
chr3 (18-70)||(30518584-30518636)
chr3 (276-365)||(30485599-30485691)
chr3 (11-70)||(30522256-30522315)
chr3 (273-395)||(30506515-30506642)
chr3 (301-365)||(30502661-30502726)
chr3 (16-44)||(30525294-30525322)
[»] chr5 (2 HSPs)
chr5 (11-70)||(38510691-38510750)
chr5 (11-70)||(38511475-38511534)
[»] chr2 (2 HSPs)
chr2 (294-342)||(29265212-29265261)
chr2 (19-51)||(29265475-29265507)
[»] chr6 (1 HSPs)
chr6 (23-73)||(10594354-10594404)


Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 150 - 414
Target Start/End: Complemental strand, 30487338 - 30487072
Alignment:
Q  150 taccaaacgcaaacacccttttgatgaaaagggtactgaggcggcaccttcaacttcagactttcgtagnnnnnnnnnnnnnnnnn--ggattttgaaag 247  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||                   ||||||||||||    
T  30487338 taccaaacgcaaacccccttttgatgaaaagggtactgaggcggcaccttcaacttcagaatttcttagtttttttttttttttttttggattttgaaag 30487239  T
Q  248 aagttagagccaatttcaggcgagattctgattttctgattgaattggtatttcccactaaagcctctctcattgtaatcatagcccttttctttctaca 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30487238 aagttagagccaatttcaggcgagattctgattttctgattgaattggtatttcccactaaagcctctctcattgtaatcatagcccttttctttctaca 30487139  T
Q  348 ttcagcaaaatagctgaagacaaagaacagtgaatataatccacgcttatatagaactcccacaatg 414  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30487138 ttcagcaaaatagctgaagacaaagaacagtgaatataacccacgcttatatagaactcccacaatg 30487072  T

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Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 150 - 396
Target Start/End: Complemental strand, 30518505 - 30518260
Alignment:
Q  150 taccaaacgcaaacacccttttgatgaaaagggtactgaggcggcaccttcaacttcagactttcgtagnnnnnnnnnnnnnnnnnggattttgaaagaa 249  Q
    |||||||| ||||| |||||||||||||| |||||| |||||||||||||||||| | ||||||| |||                 |||||||||  |||    
T  30518505 taccaaacccaaacccccttttgatgaaa-gggtaccgaggcggcaccttcaactcctgactttcttagtttttttttttttttttggattttgatggaa 30518407  T
Q  250 gttagagccaatttcaggcgagattctgattttctgattgaattggtatttcccactaaagcctctctcattgtaatcatagcccttttctttctacatt 349  Q
    ||||||||| ||||||||||||||||| |||||| | |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30518406 gttagagccgatttcaggcgagattctaattttccgcttgagttggtatttcccactagagcctctctcattgtaatcatagcccttttctttctacatt 30518307  T
Q  350 cagcaaaatagctgaagacaaagaacagtgaatataatccacgctta 396  Q
    |||||||| |||||||| | ||||||||||||||||| |||| ||||    
T  30518306 cagcaaaacagctgaaggcgaagaacagtgaatataacccacactta 30518260  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 30487479 - 30487415
Alignment:
Q  9 gaagaatatcagaaggttgaggggctcatatcaagtataaattatgaaagctctgccactgtagg 73  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30487479 gaagaaaatcagaaggttgaggggctcatatcaaggataaattatgaaagctctgccactgtagg 30487415  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 294 - 365
Target Start/End: Complemental strand, 30505163 - 30505092
Alignment:
Q  294 ggtatttcccactaaag-cctctctcattgtaatcatagcccttttctttctacattcagcaaaatagctgaa 365  Q
    ||||||||||||||||| ||||||||||||||||||| |||| ||| ||||||| |||||||||| |||||||    
T  30505163 ggtatttcccactaaagacctctctcattgtaatcatcgccccttt-tttctactttcagcaaaacagctgaa 30505092  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 30505453 - 30505399
Alignment:
Q  16 atcagaaggttgaggggctcatatcaagtataaattatgaaagctctgccactgt 70  Q
    ||||||| ||||||||||||||||||||| ||||||| |||||||||| ||||||    
T  30505453 atcagaaagttgaggggctcatatcaagtgtaaattaagaaagctctgtcactgt 30505399  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 30489617 - 30489577
Alignment:
Q  17 tcagaaggttgaggggctcatatcaagtataaattatgaaa 57  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  30489617 tcagaaggttgaggggctcatatcaagtgtaaattatgaaa 30489577  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 276 - 382
Target Start/End: Complemental strand, 30520167 - 30520060
Alignment:
Q  276 tgattttctgattgaattgg-tatttcccactaaag-cctctctcattgtaatcatagcccttttctttctacattcagcaaaatagctgaagacaaaga 373  Q
    |||||||| |||| |||||| |||||||||||| || ||||||||||||||||||| ||||  || ||||||| |||||||||| |||||||  ||| ||    
T  30520167 tgattttccgattaaattgggtatttcccactacagacctctctcattgtaatcatcgccccatt-tttctaccttcagcaaaacagctgaaagcaatga 30520069  T
Q  374 acagtgaat 382  Q
    ||| |||||    
T  30520068 acaatgaat 30520060  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 30520436 - 30520396
Alignment:
Q  17 tcagaaggttgaggggctcatatcaagtataaattatgaaa 57  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  30520436 tcagaaggttgaggggctcatatcaagtgtaaattatgaaa 30520396  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 353
Target Start/End: Complemental strand, 30522041 - 30521956
Alignment:
Q  273 ttctgattttctgattgaattgg----tatttcccactaaag-cctctctcattgtaatcatagcccttttctttctacattcagc 353  Q
    ||||||||||| |||||||||||    ||||||||||||||| ||||||||||| ||||||| |||| ||||||| ||| ||||||    
T  30522041 ttctgattttccgattgaattgggtattatttcccactaaaggcctctctcattataatcatggcccctttctttttaccttcagc 30521956  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 30516217 - 30516171
Alignment:
Q  16 atcagaaggttgaggggctcatatcaagtataaattatgaaagctctg 63  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||    
T  30516217 atcagaaggttgaggg-ctcatatcaagtgtaaattatgaaagctctg 30516171  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 30487779 - 30487725
Alignment:
Q  19 agaaggttgaggggctcatatcaagtataaattatgaaagctctgccactgtagg 73  Q
    |||||||||||||||||||||||||| ||||||  ||||| |||| |||||||||    
T  30487779 agaaggttgaggggctcatatcaagtgtaaatttagaaagatctgtcactgtagg 30487725  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 30518636 - 30518584
Alignment:
Q  18 cagaaggttgaggggctcatatcaagtataaattatgaaagctctgccactgt 70  Q
    ||||||| ||||||  ||||||||||||||||||||||| |||||| ||||||    
T  30518636 cagaaggctgagggcttcatatcaagtataaattatgaaggctctgtcactgt 30518584  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 365
Target Start/End: Complemental strand, 30485691 - 30485599
Alignment:
Q  276 tgattttctgattgaattgg-tatttcccactaaagcc---tctctcattgtaatcatagcccttttctttctacattcagcaaaatagctgaa 365  Q
    ||||||||||| | |||||| ||||||||||||||| |   ||||||||||||||||| ||||  || ||||||| |||||||||| |||||||    
T  30485691 tgattttctgaataaattgggtatttcccactaaagacctctctctcattgtaatcattgccccatt-tttctactttcagcaaaacagctgaa 30485599  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 30522315 - 30522256
Alignment:
Q  11 agaatatcagaaggttgaggggctcatatcaagtataaattatgaaagctctgccactgt 70  Q
    |||| |||||||| | |||||||||||||||||| |||||| |||||| |||| ||||||    
T  30522315 agaaaatcagaagatcgaggggctcatatcaagtgtaaattttgaaagatctgtcactgt 30522256  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 395
Target Start/End: Complemental strand, 30506642 - 30506515
Alignment:
Q  273 ttctgattttctgattgaattg----gtatttcccactaaa-gcctctctcattgtaatcatagcccttttctttctacattcagcaaaatagctgaaga 367  Q
    ||||||||||| ||||||||||     |||||||||||||| ||||||||| || |||| ||  ||||||||||| ||| |||| ||||  |||||||      
T  30506642 ttctgattttccgattgaattgattattatttcccactaaaggcctctctcgttataataatctcccttttctttataccttcatcaaatcagctgaaag 30506543  T
Q  368 caaagaacagtgaatataatccacgctt 395  Q
    ||| ||||| ||||| ||| ||||||||    
T  30506542 caatgaacaatgaatctaacccacgctt 30506515  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 365
Target Start/End: Complemental strand, 30502726 - 30502661
Alignment:
Q  301 cccactaaag-cctctctcattgtaatcatagcccttttctttctacattcagcaaaatagctgaa 365  Q
    |||||||||| |||||||| |||||||||| |||||||||||  ||| ||| |||||| |||||||    
T  30502726 cccactaaaggcctctctcgttgtaatcatcgcccttttcttaataccttcggcaaaacagctgaa 30502661  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 30525322 - 30525294
Alignment:
Q  16 atcagaaggttgaggggctcatatcaagt 44  Q
    |||||||||||||||||||||||||||||    
T  30525322 atcagaaggttgaggggctcatatcaagt 30525294  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 38510750 - 38510691
Alignment:
Q  11 agaatatcagaaggttgaggggctcatatcaagtataaattatgaaagctctgccactgt 70  Q
    |||| ||||| ||||||||||||||||||||||| |||||| |||||| |||| ||||||    
T  38510750 agaaaatcagtaggttgaggggctcatatcaagtgtaaattttgaaagatctgtcactgt 38510691  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 38511534 - 38511475
Alignment:
Q  11 agaatatcagaaggttgaggggctcatatcaagtataaattatgaaagctctgccactgt 70  Q
    |||| ||||||||||||||||||||||||||||| |||| | |||||| |||| ||||||    
T  38511534 agaaaatcagaaggttgaggggctcatatcaagtgtaaactttgaaagatctgtcactgt 38511475  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 294 - 342
Target Start/End: Complemental strand, 29265261 - 29265212
Alignment:
Q  294 ggtatttcccactaaag-cctctctcattgtaatcatagcccttttcttt 342  Q
    ||||||||||||||||| ||||||||||||||||||| |||| |||||||    
T  29265261 ggtatttcccactaaaggcctctctcattgtaatcatcgcccctttcttt 29265212  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 29265507 - 29265475
Alignment:
Q  19 agaaggttgaggggctcatatcaagtataaatt 51  Q
    |||||||||||||||||||||||||| ||||||    
T  29265507 agaaggttgaggggctcatatcaagtgtaaatt 29265475  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 10594404 - 10594354
Alignment:
Q  23 ggttgaggggctcatatcaagtataaattatgaaagctctgccactgtagg 73  Q
    |||||| ||||||||||||||| |||||| |||||| |||| |||||||||    
T  10594404 ggttgaagggctcatatcaagtgtaaattttgaaagatctgtcactgtagg 10594354  T

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