View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18833_low_8 (Length: 351)
Name: NF18833_low_8
Description: NF18833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18833_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 7425628 - 7425959
Alignment:
| Q |
1 |
caaggaataaaatccccaatattgaagaccccattaagcaaaaacaattcatctaacatcttcttaaactcttcaggggaaataatagcattttcactct |
100 |
Q |
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||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7425628 |
caaggaataaaatccccaacattgaggaccccattaagcaaaaacaattcatctaacatcttcttaaactcttcaggggaaataatagcattttcactct |
7425727 |
T |
|
| Q |
101 |
tctccaaatactttttccccaaaaccatgcgacttataacattgagactcaaagttgaaagatggtccttcaacaaaattgttttgttttttgagttaaa |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7425728 |
tctccaaatactttttgcccaaaaccatgcgacttataacattgagactcaaagttgaaagatggtccttcaacaaaattgttttgttttttgaattaaa |
7425827 |
T |
|
| Q |
201 |
tagttcgtgcaagaaagcatgtaactcttgttttctcatgtactcataagactcgaggcgttttacactaaacagttctagtagacacattttacgagct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7425828 |
tagttcgtgcaagaaagcatgtaactcttgttttctcatgtactcataagactcaaggcgttttacactaaacagttctagcagacacattttacgagct |
7425927 |
T |
|
| Q |
301 |
tgttgccaatatgggccgtattgggaccaagt |
332 |
Q |
| |
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||||||||||||||||| |||||||||||||| |
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| T |
7425928 |
tgttgccaatatgggccatattgggaccaagt |
7425959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 7431617 - 7431937
Alignment:
| Q |
1 |
caaggaataaaatccccaatattgaagaccccattaagcaaaaacaattcatctaacatcttcttaaactcttcaggggaaataatagcattttcactct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
7431617 |
caaggaataaaatccccaatattgaagaccccattaagcaaaaacaactcatccaacatctccttaaactcttcaggggaaataataacattttcactct |
7431716 |
T |
|
| Q |
101 |
tctccaaatactttttccccaaaaccatgcgacttataacattgagactcaaagttgaaagatggtccttcaacaaaattgttttgttttttgagttaaa |
200 |
Q |
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||||||| || || |||||||| |||||||| ||||||| ||| ||||| ||||||||||||||||||||||||||||| ||||| |||||||| || || |
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| T |
7431717 |
tctccaagtatttcttccccaacaccatgcggcttataatattaagactaaaagttgaaagatggtccttcaacaaaatagttttattttttgaattgaa |
7431816 |
T |
|
| Q |
201 |
tagttcgtgcaagaaagcatgtaactcttgttttctcatgtactcataagactcgaggcgttttacactaaacagttctagtagacacattttacgagct |
300 |
Q |
| |
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|||| |||| ||| |||||| |||| ||||||||||||||||||||||||||| | |||||||||||||| ||| | || |||||||||| ||| |
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| T |
7431817 |
gagtttatgcagaaaaatatgtaattcttcttttctcatgtactcataagactcgagactttttacactaaacaattccctttgaaacattttacgggct |
7431916 |
T |
|
| Q |
301 |
tgttgccaatatgggccgtat |
321 |
Q |
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||||| ||||||| |||||| |
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| T |
7431917 |
tgttgaaaatatggaccgtat |
7431937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 7416642 - 7416974
Alignment:
| Q |
1 |
caaggaataaaatccccaatattgaagaccccattaagcaaaaacaattcatctaacatcttcttaaactcttcaggggaaataatagcattttcactct |
100 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||| ||||| ||| ||| |
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| T |
7416642 |
caaggaataaaatccccaatattgagaattccattaagtaaaaacaactcatccaacatcttcttaaactcatcaggggaaataactgcattatcagtct |
7416741 |
T |
|
| Q |
101 |
tctccaaatactttttccccaaaaccatgcgacttataacattgagactcaaagttgaaagatggtccttcaacaaaattgttttgttttttgagttaaa |
200 |
Q |
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| ||||| ||||||||||| | ||||| |||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||| || || |
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| T |
7416742 |
tttccaagtactttttccctagcaccattcgacttataacatttagactcaaagttgaaagatggtctttcaccaaaattgttttgttttttgaattgaa |
7416841 |
T |
|
| Q |
201 |
tagttcgtgcaagaaagcatgtaactcttgttttctcatgtactcataagactcgaggcgttttacactaaacagttctagtagacacattttacgagct |
300 |
Q |
| |
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|||| ||||| ||| |||| | |||||||||||| |||||||| |||||||||||||||||| ||||||||| || | |||||||||| |||||||| |
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| T |
7416842 |
aagtttatgcaaaaaatcatgcatctcttgttttcttatgtactcgtaagactcgaggcgttttgcactaaacaactccaatagacacattctacgagct |
7416941 |
T |
|
| Q |
301 |
tgttgccaatatgggccgtattgggaccaagtt |
333 |
Q |
| |
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|| |||||||||| || ||||| ||||||||| |
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| T |
7416942 |
tgacgccaatatggaccatattgagaccaagtt |
7416974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 190
Target Start/End: Complemental strand, 7430039 - 7429973
Alignment:
| Q |
124 |
accatgcgacttataacattgagactcaaagttgaaagatggtccttcaacaaaattgttttgtttt |
190 |
Q |
| |
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||||||||||| |||| ||||| ||| |||||||||||||||||||| ||| |||| ||||| |||| |
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| T |
7430039 |
accatgcgactaataatattgaaactaaaagttgaaagatggtcctttaacgaaatagttttatttt |
7429973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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