View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18835_high_1 (Length: 293)
Name: NF18835_high_1
Description: NF18835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18835_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 3 - 273
Target Start/End: Original strand, 44993802 - 44994063
Alignment:
| Q |
3 |
taataattatcatattaacatttgttattaaaaaa-tcggataaatttgtaaataacgcataagttttttaatgttgatgcgtctagatgatggcccaca |
101 |
Q |
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| T |
44993802 |
taataattatcatattaacatttgttattaaaaaagtcggataaatttgcaaataacgcataagttttttaatgttgttgcgtctagatgatggcccaca |
44993901 |
T |
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| Q |
102 |
ttttgtcatatttgtcatgttttggcatagaacacaagtttgggtcaaattgtctattccaagtattttagacgaattatgacacctccacaactttggt |
201 |
Q |
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| T |
44993902 |
ttttgtcatatttgtcatgttttgtcatagaacacaagtttgggtcaaattgtctattccaagtattttagacgaattatgacacctccacaactttggt |
44994001 |
T |
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| Q |
202 |
gaaactcttttgcccaaagaaagattaagaaagatttaactaactcgtaatctatggttgctagctcgacat |
273 |
Q |
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| T |
44994002 |
gaaactcttttgcc----------ttaagaaagatttaactaacccgtaatctatggtcgctagctcgacat |
44994063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 46612943 - 46612906
Alignment:
| Q |
1 |
cataataattatcatattaacatttgttattaaaaaat |
38 |
Q |
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| T |
46612943 |
cataacaattaacatattaacatttgttattaaaaaat |
46612906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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