View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18835_high_3 (Length: 250)

Name: NF18835_high_3
Description: NF18835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18835_high_3
NF18835_high_3
[»] chr7 (5 HSPs)
chr7 (10-250)||(46024286-46024521)
chr7 (99-250)||(30429129-30429275)
chr7 (85-244)||(46573177-46573331)
chr7 (10-97)||(30430117-30430204)
chr7 (10-40)||(46573139-46573169)
[»] chr5 (6 HSPs)
chr5 (10-246)||(13363040-13363271)
chr5 (10-250)||(23335275-23335510)
chr5 (10-250)||(25016812-25017040)
chr5 (11-112)||(42512389-42512490)
chr5 (85-221)||(28069858-28069986)
chr5 (10-46)||(28069820-28069856)
[»] chr4 (11 HSPs)
chr4 (10-246)||(4168621-4168852)
chr4 (10-250)||(22180817-22181052)
chr4 (10-239)||(18923527-18923750)
chr4 (10-225)||(21097402-21097612)
chr4 (10-249)||(27764505-27764739)
chr4 (85-228)||(45256221-45256359)
chr4 (70-206)||(38485313-38485439)
chr4 (155-250)||(51836833-51836927)
chr4 (86-121)||(51836798-51836833)
chr4 (10-48)||(45256359-45256397)
chr4 (10-47)||(51836759-51836796)
[»] chr3 (8 HSPs)
chr3 (10-250)||(8718368-8718603)
chr3 (10-250)||(9070255-9070490)
chr3 (85-250)||(7044978-7045138)
chr3 (86-250)||(51362120-51362276)
chr3 (85-226)||(19385005-19385141)
chr3 (10-47)||(51362081-51362118)
chr3 (10-46)||(7044940-7044976)
chr3 (10-46)||(19384967-19385003)
[»] scaffold0097 (1 HSPs)
scaffold0097 (10-250)||(13870-14101)
[»] chr2 (3 HSPs)
chr2 (10-250)||(20710031-20710262)
chr2 (85-250)||(18297788-18297948)
chr2 (10-48)||(18297750-18297788)
[»] chr8 (3 HSPs)
chr8 (11-243)||(15260421-15260648)
chr8 (10-244)||(39022240-39022469)
chr8 (10-225)||(32987023-32987232)
[»] scaffold0194 (1 HSPs)
scaffold0194 (10-221)||(27889-28095)
[»] chr1 (3 HSPs)
chr1 (10-250)||(18057061-18057296)
chr1 (10-250)||(23319656-23319891)
chr1 (10-250)||(45889855-45890093)
[»] scaffold0238 (2 HSPs)
scaffold0238 (151-228)||(24976-25053)
scaffold0238 (10-47)||(24887-24924)


Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 46024521 - 46024286
Alignment:
Q  10 agaagaagaaaacgcgagggaagaagaggagcgaaccggctcaacaacaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactcctt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46024521 agaagaagaaaacgcgagggaagaagaggagcgaaccggctcaacaacaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactcctt 46024422  T
Q  110 ctcgttgtgtttttgcgcgatccgaattcggatttggctttaaaataaaacgaaaatggatgttgaaaaatggctttagtttttaaaaagggtgagtctg 209  Q
    |||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46024421 ctcgttgtgtttttgcgcgatccgaattcggatttggcttt-----aaaacgaaaatggatgttgaaaaatggctttagtttttaaaaagggtgagtctg 46024327  T
Q  210 attctccggcacggcgccgacgccgcctctggccggcgacc 250  Q
    |||||||| |||||||||| |||||||||||||||||||||    
T  46024326 attctccgtcacggcgccgccgccgcctctggccggcgacc 46024286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 99 - 250
Target Start/End: Complemental strand, 30429275 - 30429129
Alignment:
Q  99 atctactccttctcgttgtgtttttgcgcgatccgaattcggatttggctttaaaataaaacgaaaatggatgttgaaaaatggctttagtttttaaaaa 198  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||      ||||||||||||||||||||||||||||||||||||||    
T  30429275 atctactccttctcgttgtgtttttgcgcgatccgagttcgaatttggctttaaaaa-----gaaaatggatgttgaaaaatggctttagtttttaaaaa 30429181  T
Q  199 gggtgagtctgattctccggcacggcgccgacgccgcctctggccggcgacc 250  Q
     ||||||| || |||||||||||||||||| |||||||||||||||||||||    
T  30429180 aggtgagtttggttctccggcacggcgccgtcgccgcctctggccggcgacc 30429129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 85 - 244
Target Start/End: Original strand, 46573177 - 46573331
Alignment:
Q  85 gttttaatctttagatctactccttctcgttgtgtttttgcgcgatccgaattcggatttggctttaaaataaaacgaaaatggatgttgaaaaatggct 184  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||     ||||||||||||||||||||||||||    
T  46573177 gttttaatctttagatctactccttctcgttgtgcttttgcgcgatccgagtccggatttggctttaaa-----acgaaaatggatgttgaaaaatggct 46573271  T
Q  185 ttagtttttaaaaagggtgagtctgattctccggcacggcgccgacgccgcctctggccg 244  Q
    |||||||||||||||||||||| || ||||| ||||||||| |  ||| |||||||||||    
T  46573272 ttagtttttaaaaagggtgagtttggttctctggcacggcggcaccgctgcctctggccg 46573331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 30430204 - 30430117
Alignment:
Q  10 agaagaagaaaacgcgagggaagaagaggagcgaaccggctcaacaacaagtgaagcaaagaaaatttcgtttgtgttttaatcttta 97  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  30430204 agaagaagaaaacgcgagggaagaagaggagcgaaccgactcaacagcaagtgaagcaaagaaaatttcgtttatgttttaatcttta 30430117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 40
Target Start/End: Original strand, 46573139 - 46573169
Alignment:
Q  10 agaagaagaaaacgcgagggaagaagaggag 40  Q
    |||||||||||||||||||||||||||||||    
T  46573139 agaagaagaaaacgcgagggaagaagaggag 46573169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 181; Significance: 7e-98; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 10 - 246
Target Start/End: Complemental strand, 13363271 - 13363040
Alignment:
Q  10 agaagaagaaaacgcgagggaagaagaggagcgaaccggctcaacaacaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactcctt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13363271 agaagaagaaaacgcgagggaagaagaggagcgaaccggctcaacaacaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactcctt 13363172  T
Q  110 ctcgttgtgtttttgcgcgatccgaattcggatttggctttaaaataaaacgaaaatggatgttgaaaaatggctttagtttttaaaaagggtgagtctg 209  Q
    ||||||||||||||||||||||||| ||| |||||| |||     |||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  13363171 ctcgttgtgtttttgcgcgatccgagttcagatttgactt-----taaaacgaaaatggatgttgaaaaatggctttagtttttaaaaagggtgagtttg 13363077  T
Q  210 attctccggcacggcgccgacgccgcctctggccggc 246  Q
     ||||| || ||||||||| |||| ||||||||||||    
T  13363076 gttctcaggtacggcgccgccgccacctctggccggc 13363040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 23335275 - 23335510
Alignment:
Q  10 agaagaagaaaacgcgagggaagaagaggagcgaaccggctcaacaacaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactcctt 109  Q
    ||||||| |||| || |||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| |||||||| ||    
T  23335275 agaagaaaaaaatgcaagggaagaagaggagcgaaccggctcaacagcaagttaagcaaagaaaattttgtttgtgttttaatctttaaatctactcatt 23335374  T
Q  110 ctcgttgtgtttttgcgcgatccgaattcggatttggctttaaaataaaacgaaaatggatgttgaaaaatggctttagtttttaaaaagggtgagtctg 209  Q
    || |||||||||||||||||||||| |||||||| |||||     ||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||    
T  23335375 ctagttgtgtttttgcgcgatccgagttcggattaggctt-----taaaacgaaaatgaatgttgaaaaatggctttagttttttaaaagggtgagtttg 23335469  T
Q  210 attctccggcacggcgccgacgccgcctctggccggcgacc 250  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  23335470 attctccggcacggcgccgccgccgcctctggccggcgacc 23335510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 25016812 - 25017040
Alignment:
Q  10 agaagaagaaaacgcgagggaagaagaggagcgaaccggctcaacaacaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactcctt 109  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||| |||||||| |||||||||||||||||||||||||||||     
T  25016812 agaagaagaaaacgtgagggaagaagaggagcgaaccggctcaacagctagtgaagcaaaaaaaatttcatttgtgttttaatctttagatctactcctc 25016911  T
Q  110 ctcgttgtgtttttgcgcgatccgaattcggatttggctttaaaataaaacgaaaatggatgttgaaaaatggctttagtttttaaaaagggtgagtctg 209  Q
    ||||||||||||||||||||||||| |||||||            |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  25016912 ctcgttgtgtttttgcgcgatccgagttcggat------------taaaacaaaaatggatgttgaaaaatggctttagtttttaaaaagggtgagtttg 25016999  T
Q  210 attctccggcacggcgccgacgccgcctctggccggcgacc 250  Q
     ||||||  ||||| | || || ||||||||||||||||||    
T  25017000 gttctccaacacggtggcgccgtcgcctctggccggcgacc 25017040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 42512490 - 42512389
Alignment:
Q  11 gaagaagaaaacgcgagggaagaagaggagcgaaccggctcaacaacaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactccttc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  42512490 gaagaagaaaacgcgagggaagaagaggagcgaaccggctcaacaacaagtgaagcaaagaaaatttcgtttgtgtttaaatttttagatctactccttc 42512391  T
Q  111 tc 112  Q
    ||    
T  42512390 tc 42512389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 85 - 221
Target Start/End: Original strand, 28069858 - 28069986
Alignment:
Q  85 gttttaatctttagatctactccttctcgttgtgtttttgcgcgatccgaattcggatttggctttaaaataaaacgaaaatggatgttgaaaaatggct 184  Q
    |||||||||||||||||||||||||   |||||||||||||| ||||||| ||||||||||||||||||     ||||||||||||||||||| ||| ||    
T  28069858 gttttaatctttagatctactcctt---gttgtgtttttgcgggatccgagttcggatttggctttaaa-----acgaaaatggatgttgaaatatgact 28069949  T
Q  185 ttagtttttaaaaagggtgagtctgattctccggcac 221  Q
    |||||||||||||||||||| | || |||||||||||    
T  28069950 ttagtttttaaaaagggtgactttggttctccggcac 28069986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 28069820 - 28069856
Alignment:
Q  10 agaagaagaaaacgcgagggaagaagaggagcgaacc 46  Q
    |||||||||||||||||||||||||||||||||||||    
T  28069820 agaagaagaaaacgcgagggaagaagaggagcgaacc 28069856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 10 - 246
Target Start/End: Complemental strand, 4168852 - 4168621
Alignment:
Q  10 agaagaagaaaacgcgagggaagaagaggagcgaaccggctcaacaacaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactcctt 109  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4168852 agaagaagaaaatgcgagggaagaagaggagcgaaccggctcaacagcaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactcctt 4168753  T
Q  110 ctcgttgtgtttttgcgcgatccgaattcggatttggctttaaaataaaacgaaaatggatgttgaaaaatggctttagtttttaaaaagggtgagtctg 209  Q
    ||| ||||||||||||| ||||||| |||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  4168752 ctcattgtgtttttgcgtgatccgagttcggatttggcttt-----aaaacgaaaatggatgttgaaaaatggctttagtttttaaaaagggtgagtttg 4168658  T
Q  210 attctccggcacggcgccgacgccgcctctggccggc 246  Q
     |||||| ||||||||||| ||| |||||||||||||    
T  4168657 gttctccagcacggcgccgccgctgcctctggccggc 4168621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 22180817 - 22181052
Alignment:
Q  10 agaagaagaaaacgcgagggaagaagaggagcgaaccggctcaacaacaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactcctt 109  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22180817 agaagaagaaaacacgagggaagaagaggagcgaaccggctcaacagcaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactcctt 22180916  T
Q  110 ctcgttgtgtttttgcgcgatccgaattcggatttggctttaaaataaaacgaaaatggatgttgaaaaatggctttagtttttaaaaagggtgagtctg 209  Q
    ||||||||||||||||||||||||| ||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  22180917 ctcgttgtgtttttgcgcgatccgagttcggatttggctt-----taaaacgaaaatggatgttgaaaaatggctttagtttttaaaaagggtgagtttg 22181011  T
Q  210 attctccggcacggcgccgacgccgcctctggccggcgacc 250  Q
     |||||| | |||| |  | |||||||||||||||||||||    
T  22181012 gttctccagtacggtggtgccgccgcctctggccggcgacc 22181052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 10 - 239
Target Start/End: Complemental strand, 18923750 - 18923527
Alignment:
Q  10 agaagaagaaaacgcgagggaagaagaggagcgaaccggctcaacaacaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactcctt 109  Q
    ||||||||||||| |||||||||||||||||||||||| || |||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  18923750 agaagaagaaaacacgagggaagaagaggagcgaaccgacttaacatcaagtgaagtaaagaaaatttcgtttgtgttttaatatttagatctactcctt 18923651  T
Q  110 ctcgttgtgtttttgcgcgatccgaattcggatttggctttaaaataaaacgaaaatggatgttgaaaaatggctttagtttttaaaaagggtgagtctg 209  Q
    ||||||||||||||||||||||||| ||||||||||| ||     |||||||||||||||||||||||||||||||||||||||  ||||||||||| ||    
T  18923650 ctcgttgtgtttttgcgcgatccgacttcggatttggatt-----taaaacgaaaatggatgttgaaaaatggctttagtttttttaaagggtgagtttg 18923556  T
Q  210 attctccggcacggcgccgacgccgcctct 239  Q
     |||||||||||||||||| ||||||||||    
T  18923555 gttctccggcacggcgccg-cgccgcctct 18923527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 10 - 225
Target Start/End: Complemental strand, 21097612 - 21097402
Alignment:
Q  10 agaagaagaaaacgcgagggaagaagaggagcgaaccggctcaacaacaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactcctt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  21097612 agaagaagaaaacgcgagggaagaagaggagcgaaccggctcaacagtaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatatactcctt 21097513  T
Q  110 ctcgttgtgtttttgcgcgatccgaattcggatttggctttaaaataaaacgaaaatggatgttgaaaaatggctttagtttttaaaaagggtgagtctg 209  Q
    || ||||||||||||| |||| | | |||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  21097512 cttgttgtgtttttgctcgattcaagttcggatttggcttt-----aaaacgaaaatggatgttgaaaaatggctttagtttttaaaaagggtgagtttg 21097418  T
Q  210 attctccggcacggcg 225  Q
      ||||| ||||||||    
T  21097417 gctctccagcacggcg 21097402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 10 - 249
Target Start/End: Complemental strand, 27764739 - 27764505
Alignment:
Q  10 agaagaagaaaacgcgagggaagaagaggagcgaaccggctcaacaacaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactcctt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||  ||    
T  27764739 agaagaagaaaacgcgagggaagaagaggagcgaaccggctcaacagcaagtgaagcaaagaaaatttcgtctgtgttttaatctttaggtctactattt 27764640  T
Q  110 ctcgttgtgtttttgcgcgatccgaattcggatttggctttaaaataaaacgaaaatggatgttgaaaaatggctttagtttttaaaaagggtgagtctg 209  Q
    ||| ||||||||||||||||||| | |||  |||||||||||||| ||||     || ||||||||||||||||||||||||||||||||||||||| ||    
T  27764639 ctcattgtgtttttgcgcgatcccagttcaaatttggctttaaaacaaaa-----attgatgttgaaaaatggctttagtttttaaaaagggtgagtttg 27764545  T
Q  210 attctccggcacggcgccgacgccgcctctggccggcgac 249  Q
     |||||| ||||||||  | ||||||||||||||||||||    
T  27764544 gttctccagcacggcggtgccgccgcctctggccggcgac 27764505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 85 - 228
Target Start/End: Complemental strand, 45256359 - 45256221
Alignment:
Q  85 gttttaatctttagatctactccttctcgttgtgtttttgcgcgatccgaattcggatttggctttaaaataaaacgaaaatggatgttgaaaaatggct 184  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||     |||||||||||||||||||||||||||||    
T  45256359 gttttaatctttagatctactccttctcgttgagtttttgcgcgatccgagttcggatttggcttt-----aaaacgaaaatggatgttgaaaaatggct 45256265  T
Q  185 ttagtttttaaaaagggtgagtctgattctccggcacggcgccg 228  Q
    |||||||||||||||| ||| | || ||||||||||||||||||    
T  45256264 ttagtttttaaaaaggatgaatttggttctccggcacggcgccg 45256221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 70 - 206
Target Start/End: Original strand, 38485313 - 38485439
Alignment:
Q  70 gaaaatttcgtttgtgttttaatctttagatctactccttctcgttgtgtttttgcgcgatccgaattcggatttggctttaaaataaaacgaaaatgga 169  Q
    |||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||| ||||||| |||| |||||||||     |||||||||||||||    
T  38485313 gaaaatttcgtttgtgttttaatctttaaatctactcattctcattgtgtttttgcgtgatccgagttcgaatttggctt-----taaaacgaaaatgga 38485407  T
Q  170 tgttgaaaaatggctttagtttttaaaaagggtgagt 206  Q
    |||||||||||||     |||||||||||||||||||    
T  38485408 tgttgaaaaatgg-----gtttttaaaaagggtgagt 38485439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 155 - 250
Target Start/End: Original strand, 51836833 - 51836927
Alignment:
Q  155 taaaacgaaaatggatgttgaaaaatggctttagtttttaaaaagggtgagtctgattctccggcacggcgccgacgccgcctctggccggcgacc 250  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||| || |||||||||| || | ||  ||||||||||| ||||||||    
T  51836833 taaaacgaaaatggatgtggaaaaatggctttaatttttaaaaagggtgagtttggttctccggcatggtg-cgctgccgcctctggtcggcgacc 51836927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 121
Target Start/End: Original strand, 51836798 - 51836833
Alignment:
Q  86 ttttaatctttagatctactccttctcgttgtgttt 121  Q
    ||||||||||||||||||||||||||||||||||||    
T  51836798 ttttaatctttagatctactccttctcgttgtgttt 51836833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 45256397 - 45256359
Alignment:
Q  10 agaagaagaaaacgcgagggaagaagaggagcgaaccgg 48  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  45256397 agaagaagaaaatgcgagggaagaagaggagcgaaccgg 45256359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 51836759 - 51836796
Alignment:
Q  10 agaagaagaaaacgcgagggaagaagaggagcgaaccg 47  Q
    |||||||||||| |||||||||||||||||||||||||    
T  51836759 agaagaagaaaatgcgagggaagaagaggagcgaaccg 51836796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 8718603 - 8718368
Alignment:
Q  10 agaagaagaaaacgcgagggaagaagaggagcgaaccggctcaacaacaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactcctt 109  Q
    |||||||||||| || | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8718603 agaagaagaaaatgcaatggaagaacaggagcgaaccggctcaacaacaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactcctt 8718504  T
Q  110 ctcgttgtgtttttgcgcgatccgaattcggatttggctttaaaataaaacgaaaatggatgttgaaaaatggctttagtttttaaaaagggtgagtctg 209  Q
    ||||||||||||||||||||||||| |||| ||||||||||     |||||||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  8718503 ctcgttgtgtttttgcgcgatccgagttcgaatttggcttt-----aaaacgaaaatgaatgttgaaaaatggctttagtttttaaaaagggtgagtttg 8718409  T
Q  210 attctccggcacggcgccgacgccgcctctggccggcgacc 250  Q
     ||||||||||||| |||| |||||||||||||||| ||||    
T  8718408 gttctccggcacggtgccgccgccgcctctggccggtgacc 8718368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 9070490 - 9070255
Alignment:
Q  10 agaagaagaaaacgcgagggaagaagaggagcgaaccggctcaacaacaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactcctt 109  Q
    |||||||||||| || | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9070490 agaagaagaaaatgcaatggaagaacaggagcgaaccggctcaacaacaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactcctt 9070391  T
Q  110 ctcgttgtgtttttgcgcgatccgaattcggatttggctttaaaataaaacgaaaatggatgttgaaaaatggctttagtttttaaaaagggtgagtctg 209  Q
    ||||||||||||||||||||||||| |||| ||||||||||     |||||||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  9070390 ctcgttgtgtttttgcgcgatccgagttcgaatttggcttt-----aaaacgaaaatgaatgttgaaaaatggctttagtttttaaaaagggtgagtttg 9070296  T
Q  210 attctccggcacggcgccgacgccgcctctggccggcgacc 250  Q
     ||||||||||||| |||| |||||||||||||||| ||||    
T  9070295 gttctccggcacggtgccgccgccgcctctggccggtgacc 9070255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 85 - 250
Target Start/End: Original strand, 7044978 - 7045138
Alignment:
Q  85 gttttaatctttagatctactccttctcgttgtgtttttgcgcgatccgaattcggatttggctttaaaataaaacgaaaatggatgttgaaaaatggct 184  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||     ||||||||||||||||||||||||||    
T  7044978 gttttaatctttagatctactccttctcgttgtgtttttgcgtgatccgagttcagatttggctttaaa-----acgaaaatggatgttgaaaaatggct 7045072  T
Q  185 ttagtttttaaaaagggtgagtctgattctccggcacggcgccgacgccgcctctggccggcgacc 250  Q
    |||||||||||||||||||||| || ||||||||||| |||||| ||| ||||||||| |||||||    
T  7045073 ttagtttttaaaaagggtgagtttggttctccggcacagcgccgccgctgcctctggcaggcgacc 7045138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 86 - 250
Target Start/End: Original strand, 51362120 - 51362276
Alignment:
Q  86 ttttaatctttagatctactccttctcgttgtgtttttgcgcgatccgaattcggatttggctttaaaataaaacgaaaatggatgttgaaaaatggctt 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||      ||||||||||||||||||||||||||||||    
T  51362120 ttttaatctttagatctactccttctcgttgtgtttttgcgcgatccgagttcggatttggctt-----gaaaacgaaaatggatgttgaaaaatggctt 51362214  T
Q  186 tagtttttaaaaagggtgagtctgattctccggcacggcgccgacgccgcctctggccggcgacc 250  Q
    || |||||||||||||||||| || |||||||||||||   || ||||||||||||||| |||||    
T  51362215 taatttttaaaaagggtgagtttggttctccggcacgg---cggcgccgcctctggccgacgacc 51362276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 85 - 226
Target Start/End: Original strand, 19385005 - 19385141
Alignment:
Q  85 gttttaatctttagatctactccttctcgttgtgtttttgcgcgatccgaattcggatttggctttaaaataaaacgaaaatggatgttgaaaaatggct 184  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||      ||||||||||||||||||||| ||    
T  19385005 gttttaatatttagatctactcattctcgttgtgtttttgcgcgatccgagttcggatttggctttaaaaa-----gaaaatggatgttgaaaaatgact 19385099  T
Q  185 ttagtttttaaaaagggtgagtctgattctccggcacggcgc 226  Q
    ||| |||||||||||||||||| || |||||| |||||||||    
T  19385100 ttattttttaaaaagggtgagtttggttctccagcacggcgc 19385141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 51362081 - 51362118
Alignment:
Q  10 agaagaagaaaacgcgagggaagaagaggagcgaaccg 47  Q
    ||||||||||||||||||||||||||||||||||||||    
T  51362081 agaagaagaaaacgcgagggaagaagaggagcgaaccg 51362118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 7044940 - 7044976
Alignment:
Q  10 agaagaagaaaacgcgagggaagaagaggagcgaacc 46  Q
    |||||||||||||||||||||||||||||||||||||    
T  7044940 agaagaagaaaacgcgagggaagaagaggagcgaacc 7044976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 19384967 - 19385003
Alignment:
Q  10 agaagaagaaaacgcgagggaagaagaggagcgaacc 46  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  19384967 agaagaagaaaacacgagggaagaagcggagcgaacc 19385003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 14101 - 13870
Alignment:
Q  10 agaagaagaaaacgcgagggaagaagaggagcgaaccggctcaacaacaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactcctt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  14101 agaagaagaaaacgcgagggaagaagaggagcgaaccggctcaacaacaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactc-tt 14003  T
Q  110 ctcgttgtgtttttgcgcgatccgaattcggatttggctttaaaataaaacgaaaatggatgttgaaaaatggctttagtttttaaaaagggtgagtctg 209  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  14002 ctcgttgtgtttttgcgcgatccgagttcgaatttggctttaaaag-----gaaaatggatgttgaaaaatggctttagtttttaaaaagggtgagtttg 13908  T
Q  210 attctccggcacggcgccgacgccgcctctggccggcgacc 250  Q
     |||||||||||| |||   | |||||||||||||||||||    
T  13907 gttctccggcacgacgc---caccgcctctggccggcgacc 13870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 20710262 - 20710031
Alignment:
Q  10 agaagaagaaaacgcgagggaagaagaggagcgaaccggctcaacaacaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactcctt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  20710262 agaagaagaaaacgcgagggaagaagaggagcgaaccggctcaacaacaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactc-tt 20710164  T
Q  110 ctcgttgtgtttttgcgcgatccgaattcggatttggctttaaaataaaacgaaaatggatgttgaaaaatggctttagtttttaaaaagggtgagtctg 209  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  20710163 ctcgttgtgtttttgcgcgatccgagttcgaatttggctttaaaag-----gaaaatggatgttgaaaaatggctttagtttttaaaaagggtgagtttg 20710069  T
Q  210 attctccggcacggcgccgacgccgcctctggccggcgacc 250  Q
     |||||||||||| |||   | |||||||||||||||||||    
T  20710068 gttctccggcacgacgc---caccgcctctggccggcgacc 20710031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 85 - 250
Target Start/End: Original strand, 18297788 - 18297948
Alignment:
Q  85 gttttaatctttagatctactccttctcgttgtgtttttgcgcgatccgaattcggatttggctttaaaataaaacgaaaatggatgttgaaaaatggct 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||     ||||||||||||||||||||||||||    
T  18297788 gttttaatctttagatctactccttctcgttgtgtttttgcgcgacccgagtttggatttggctttaaa-----acgaaaatggatgttgaaaaatggct 18297882  T
Q  185 ttagtttttaaaaagggtgagtctgattctccggcacggcgccgacgccgcctctggccggcgacc 250  Q
    ||| |||||||||||||||||| || |||||| ||||||||||| |||||||| ||||||||||||    
T  18297883 ttattttttaaaaagggtgagtttggttctccagcacggcgccgccgccgcctttggccggcgacc 18297948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 18297750 - 18297788
Alignment:
Q  10 agaagaagaaaacgcgagggaagaagaggagcgaaccgg 48  Q
    |||||||||||||||||||||||||||||||||||||||    
T  18297750 agaagaagaaaacgcgagggaagaagaggagcgaaccgg 18297788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 11 - 243
Target Start/End: Original strand, 15260421 - 15260648
Alignment:
Q  11 gaagaagaaaacgcgagggaagaagaggagcgaaccggctcaacaacaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactccttc 110  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  15260421 gaagaagaaaacacgagggaggaagaggagcgaaccggctcaacaacaagtgaagcaatgaaaattttgtttgtgttttaatctttagatctactccttc 15260520  T
Q  111 tcgttgtgtttttgcgcgatccgaattcggatttggctttaaaataaaacgaaaatggatgttgaaaaatggctttagtttttaaaaagggtgagtctga 210  Q
    ||||||| ||||||| |||||||| ||||||||||||||     |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||     
T  15260521 tcgttgtatttttgcacgatccgagttcggatttggctt-----taaaacgaaaatggatgttggaaaatggctttagtttttaaaaagggtgagtttgg 15260615  T
Q  211 ttctccggcacggcgccgacgccgcctctggcc 243  Q
    |||||||||||||||||| ||||||||||||||    
T  15260616 ttctccggcacggcgccgccgccgcctctggcc 15260648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 10 - 244
Target Start/End: Complemental strand, 39022469 - 39022240
Alignment:
Q  10 agaagaagaaaacgcgagggaagaagaggagcgaaccggctcaacaacaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactcctt 109  Q
    |||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  39022469 agaagaagaaaacgcgagggaagaagaggagcgaactgactcaacagcaagtgaagcaaagaaaattttgtttgtgttttaatctttagatctactcttt 39022370  T
Q  110 ctcgttgtgtttttgcgcgatccgaattcggatttggctttaaaataaaacgaaaatggatgttgaaaaatggctttagtttttaaaaagggtgagtctg 209  Q
    ||||||||||||||||| ||||||| |||||||||||||||     |||||||||||||||||||||||||| |||||||||||||||||||||||| ||    
T  39022369 ctcgttgtgtttttgcgtgatccgagttcggatttggcttt-----aaaacgaaaatggatgttgaaaaatgactttagtttttaaaaagggtgagtttg 39022275  T
Q  210 attctccggcacggcgccgacgccgcctctggccg 244  Q
     ||||||||||||||| || |||||||||||||||    
T  39022274 gttctccggcacggcgtcgccgccgcctctggccg 39022240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 10 - 225
Target Start/End: Original strand, 32987023 - 32987232
Alignment:
Q  10 agaagaagaaaacgcgagggaagaagaggagcgaaccggctcaacaacaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactcctt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  32987023 agaagaagaaaacgcgagggaagaagaggagcgaaccggctcaacagcaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatatactcctt 32987122  T
Q  110 ctcgttgtgtttttgcgcgatccgaattcggatttggctttaaaataaaacgaaaatggatgttgaaaaatggctttagtttttaaaaagggtgagtctg 209  Q
    |||||||||||||||||||||||   |||||||||| |||     ||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||    
T  32987123 ctcgttgtgtttttgcgcgatcc-tgttcggatttgactt-----taaaacgaaaatggatgttgaaaaatgactttaatttttaaaaagggtgagtttg 32987216  T
Q  210 attctccggcacggcg 225  Q
     |||||||||||||||    
T  32987217 gttctccggcacggcg 32987232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 10 - 221
Target Start/End: Complemental strand, 28095 - 27889
Alignment:
Q  10 agaagaagaaaacgcgagggaagaagaggagcgaaccggctcaacaacaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactcctt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28095 agaagaagaaaacgcgagggaagaagaggagcgaaccggctcaacagcaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactcctt 27996  T
Q  110 ctcgttgtgtttttgcgcgatccgaattcggatttggctttaaaataaaacgaaaatggatgttgaaaaatggctttagtttttaaaaagggtgagtctg 209  Q
    ||||||||||||||||| ||||||| || ||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  27995 ctcgttgtgtttttgcgtgatccgagtttggatttggcttt-----aaaacgaaaatggatgttgaaaaatggctttagtttttaaaaagggtgagtttg 27901  T
Q  210 attctccggcac 221  Q
     |||||||||||    
T  27900 gttctccggcac 27889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 161; Significance: 6e-86; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 18057296 - 18057061
Alignment:
Q  10 agaagaagaaaacgcgagggaagaagaggagcgaaccggctcaacaacaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactcctt 109  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  18057296 agaagaagaaaatgcgagggaagaagaggagcgaaccggctcaacaacaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactcatt 18057197  T
Q  110 ctcgttgtgtttttgcgcgatccgaattcggatttggctttaaaataaaacgaaaatggatgttgaaaaatggctttagtttttaaaaagggtgagtctg 209  Q
    |||||||||||||||| | |||||| |||| ||||| |||     |||||||||||||||||||||||||||  |||||||||||| |||||||||| ||    
T  18057196 ctcgttgtgtttttgcacaatccgagttcgaatttgactt-----taaaacgaaaatggatgttgaaaaatgaatttagtttttaagaagggtgagtttg 18057102  T
Q  210 attctccggcacggcgccgacgccgcctctggccggcgacc 250  Q
     || ||||||||||||||| |||||||| ||||||||||||    
T  18057101 gttttccggcacggcgccgccgccgcctttggccggcgacc 18057061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 23319656 - 23319891
Alignment:
Q  10 agaagaagaaaacgcgagggaagaagaggagcgaaccggctcaacaacaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactcctt 109  Q
    ||||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||| |||| ||||||||| ||||||||||||||||||||| ||    
T  23319656 agaagaagaaaacacgagggaataagaggagtgaaccggctcaacagcaagtgaagcaaaaaaaaattcgtttgtattttaatctttagatctactcatt 23319755  T
Q  110 ctcgttgtgtttttgcgcgatccgaattcggatttggctttaaaataaaacgaaaatggatgttgaaaaatggctttagtttttaaaaagggtgagtctg 209  Q
    ||||||||||||||||| ||||||| || |||||||||||     |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  23319756 ctcgttgtgtttttgcgtgatccgagtttggatttggctt-----taaaacgaaaatggatgttgaaaaatggctttagtttttaaaaatggtgagtttg 23319850  T
Q  210 attctccggcacggcgccgacgccgcctctggccggcgacc 250  Q
     |||||| |||||||| || |||||||||||||||||||||    
T  23319851 gttctccagcacggcgtcgccgccgcctctggccggcgacc 23319891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 45890093 - 45889855
Alignment:
Q  10 agaagaagaaaacgcgagggaagaagaggagcgaaccggctcaacaacaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactcctt 109  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  45890093 agaagaagaaaacgcgaaggaagaagaggagtgaaccggctcaacagcaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactcatt 45889994  T
Q  110 ctcgttgtgtttttgcgcgatccgaattcggatttggctttaaaataaaacgaaaatggatgttgaaaaatggctttagtttttaa---aaagggtgagt 206  Q
    |||||||||||||||||||||| || |||||||||||||||     |||||||||| ||||||||||||||||||||| |||||||   |||||| ||||    
T  45889993 ctcgttgtgtttttgcgcgatctgagttcggatttggcttt-----aaaacgaaaacggatgttgaaaaatggctttactttttaaaataaagggcgagt 45889899  T
Q  207 ctgattctccggcacggcgccgacgccgcctctggccggcgacc 250  Q
     || |||||||  |||||||||  ||||||||||||||||||||    
T  45889898 ttggttctccgagacggcgccgctgccgcctctggccggcgacc 45889855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 151 - 228
Target Start/End: Original strand, 24976 - 25053
Alignment:
Q  151 aaaataaaacgaaaatggatgttgaaaaatggctttagtttttaaaaagggtgagtctgattctccggcacggcgccg 228  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||    
T  24976 aaaaaaaaacgaaaatgaatgttgaaaaatggctttagtttttaaaaagggtgagtttatttctccggcacggcgccg 25053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 24887 - 24924
Alignment:
Q  10 agaagaagaaaacgcgagggaagaagaggagcgaaccg 47  Q
    ||||||||||||||||||||||||||||||||||||||    
T  24887 agaagaagaaaacgcgagggaagaagaggagcgaaccg 24924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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