View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18835_high_5 (Length: 211)

Name: NF18835_high_5
Description: NF18835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18835_high_5
NF18835_high_5
[»] chr7 (18 HSPs)
chr7 (1-198)||(46024057-46024254)
chr7 (1-198)||(30428903-30429098)
chr7 (13-149)||(46573387-46573523)
chr7 (8-110)||(33797968-33798070)
chr7 (1-132)||(15974840-15974971)
chr7 (1-86)||(5757417-5757502)
chr7 (9-67)||(48691030-48691088)
chr7 (1-86)||(32090608-32090693)
chr7 (1-67)||(48690925-48690991)
chr7 (1-61)||(44141226-44141286)
chr7 (1-67)||(28396752-28396818)
chr7 (99-149)||(48691112-48691162)
chr7 (1-62)||(12279775-12279836)
chr7 (1-62)||(48305266-48305327)
chr7 (99-149)||(28396842-28396892)
chr7 (99-149)||(48305356-48305406)
chr7 (1-62)||(12279671-12279732)
chr7 (10-39)||(27335626-27335655)
[»] chr1 (14 HSPs)
chr1 (1-198)||(18056814-18057009)
chr1 (10-198)||(23319923-23320111)
chr1 (8-198)||(45889633-45889823)
chr1 (1-149)||(22348069-22348217)
chr1 (9-149)||(179646-179786)
chr1 (10-143)||(8402204-8402337)
chr1 (12-110)||(30802437-30802535)
chr1 (1-86)||(16115881-16115966)
chr1 (1-86)||(37639372-37639457)
chr1 (1-86)||(35198131-35198216)
chr1 (1-62)||(51420376-51420436)
chr1 (1-36)||(11421625-11421660)
chr1 (1-36)||(34369691-34369726)
chr1 (1-33)||(4097911-4097943)
[»] chr8 (12 HSPs)
chr8 (1-198)||(15260689-15260886)
chr8 (1-197)||(32987286-32987480)
chr8 (1-198)||(39022005-39022202)
chr8 (1-149)||(7058144-7058292)
chr8 (1-149)||(8550534-8550682)
chr8 (1-149)||(4836588-4836736)
chr8 (1-149)||(4842033-4842181)
chr8 (1-110)||(7614098-7614207)
chr8 (47-136)||(2750101-2750190)
chr8 (1-86)||(15181821-15181906)
chr8 (1-67)||(1208739-1208805)
chr8 (99-149)||(1208829-1208877)
[»] chr4 (17 HSPs)
chr4 (1-198)||(4168388-4168585)
chr4 (1-198)||(21097170-21097367)
chr4 (1-198)||(38485510-38485709)
chr4 (1-198)||(22181084-22181280)
chr4 (1-198)||(27764270-27764472)
chr4 (1-149)||(26447299-26447447)
chr4 (1-150)||(637884-638031)
chr4 (5-149)||(51836977-51837122)
chr4 (1-149)||(45256005-45256155)
chr4 (64-198)||(18923352-18923484)
chr4 (1-110)||(36621627-36621736)
chr4 (1-86)||(50563679-50563764)
chr4 (10-61)||(6386516-6386567)
chr4 (8-47)||(1729604-1729643)
chr4 (1-36)||(26578189-26578224)
chr4 (41-83)||(48077817-48077859)
chr4 (1-33)||(53441351-53441383)
[»] scaffold0194 (1 HSPs)
scaffold0194 (8-198)||(27644-27834)
[»] scaffold0097 (1 HSPs)
scaffold0097 (8-198)||(13650-13838)
[»] chr2 (13 HSPs)
chr2 (8-198)||(20709811-20709999)
chr2 (1-150)||(18297997-18298146)
chr2 (1-149)||(25192922-25193070)
chr2 (13-86)||(4281738-4281811)
chr2 (10-86)||(25995326-25995402)
chr2 (8-67)||(14551288-14551347)
chr2 (1-58)||(4579796-4579853)
chr2 (1-62)||(5098747-5098808)
chr2 (99-149)||(4579713-4579763)
chr2 (12-61)||(36636912-36636961)
chr2 (1-36)||(8149862-8149897)
chr2 (1-36)||(8154486-8154521)
chr2 (26-62)||(43822409-43822445)
[»] chr5 (12 HSPs)
chr5 (1-198)||(23335542-23335742)
chr5 (1-192)||(13362800-13362999)
chr5 (1-132)||(28070057-28070188)
chr5 (1-198)||(25017072-25017252)
chr5 (70-185)||(42512273-42512388)
chr5 (8-149)||(2826956-2827095)
chr5 (1-86)||(18465506-18465591)
chr5 (1-87)||(16668743-16668829)
chr5 (1-67)||(34329157-34329223)
chr5 (11-86)||(8948930-8949003)
chr5 (1-62)||(33868186-33868247)
chr5 (8-39)||(42512236-42512267)
[»] chr3 (15 HSPs)
chr3 (1-149)||(52987537-52987685)
chr3 (1-198)||(8718131-8718336)
chr3 (1-198)||(9070018-9070223)
chr3 (1-185)||(39099227-39099413)
chr3 (1-149)||(51362326-51362473)
chr3 (1-149)||(50754036-50754182)
chr3 (1-149)||(7045188-7045335)
chr3 (1-137)||(19385214-19385350)
chr3 (1-108)||(16277342-16277449)
chr3 (10-86)||(23699367-23699443)
chr3 (10-86)||(23717822-23717898)
chr3 (10-86)||(23736278-23736354)
chr3 (9-62)||(17627205-17627258)
chr3 (1-86)||(23755316-23755394)
chr3 (107-146)||(31852242-31852281)
[»] chr6 (8 HSPs)
chr6 (1-149)||(33346258-33346406)
chr6 (1-149)||(24737580-24737726)
chr6 (9-149)||(877246-877384)
chr6 (1-86)||(29157256-29157341)
chr6 (10-86)||(18611228-18611304)
chr6 (13-70)||(34399683-34399740)
chr6 (1-46)||(35119265-35119310)
chr6 (1-69)||(15034942-15035010)
[»] scaffold0238 (1 HSPs)
scaffold0238 (1-120)||(25148-25267)
[»] scaffold0337 (1 HSPs)
scaffold0337 (8-62)||(7054-7108)
[»] scaffold0544 (1 HSPs)
scaffold0544 (8-62)||(10649-10703)


Alignment Details
Target: chr7 (Bit Score: 178; Significance: 3e-96; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 46024057 - 46024254
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  46024057 tatgcaccgtgcataaacacttcacaaccatcagatatagtgtacacgtgtaataatcctagacttctcaaactacattaaatcaaacttcatttgcttc 46024156  T
Q  101 aaatatttctctcactaaaacataaagttctccctctatctctacaattttcaacattctggaaaagaaaacgaagaactcagattagtcttcatctc 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  46024157 aaatatttctctcactaaaacataaagttctccctctatctctacaattttcaacattttggaaaagaaaacgaagaactcagattagtcttcatctc 46024254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 30428903 - 30429098
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  30428903 tatgcaccgtgcataaacatttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgcttc 30429002  T
Q  101 aaatatttctctcactaaaacataaagttctccctctatctctacaattttcaacattctggaaaagaaaacgaagaactcagattagtcttcatctc 198  Q
    ||| |||| ||||||||||||||||||  ||||| || |||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||    
T  30429003 aaacatttatctcactaaaacataaag--ctccccctctctctacaattttcaacattctagaaaagaaaacgaagaactcagacgagtcttcatctc 30429098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 46573523 - 46573387
Alignment:
Q  13 ataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttcaaatatttctct 112  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  46573523 ataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgcttcaaacatttctct 46573424  T
Q  113 cactaaaacataaagttctccctctatctctacaatt 149  Q
    ||||||||||||||| ||||||||| | |||||||||    
T  46573423 cactaaaacataaagctctccctctctatctacaatt 46573387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 33797968 - 33798070
Alignment:
Q  8 cgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttcaaatatt 107  Q
    |||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  33797968 cgtgcataaacatttcacaaccatcagatctagtatacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttcaaacatt 33798067  T
Q  108 tct 110  Q
    |||    
T  33798068 tct 33798070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 15974971 - 15974840
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| |||||||||||||||||||||||||| || || ||||||| |||||||||| ||| ||| ||||| |||| ||||||||||||||| ||||||    
T  15974971 tatgcaccgtgcataaacacttcacaaccatcatatttagtgtacacatgtaataatcttaggcttatcaaagtacaccaaatcaaacttcatctgcttc 15974872  T
Q  101 aaatatttctctcactaaaacataaagttctc 132  Q
    ||| ||||||||||||||||||||||| ||||    
T  15974871 aaacatttctctcactaaaacataaagctctc 15974840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 5757417 - 5757502
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaa 86  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  5757417 tatgcaccgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctagacttctcaaactacaccaaatcaa 5757502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 48691030 - 48691088
Alignment:
Q  9 gtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttc 67  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  48691030 gtgcatagacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttc 48691088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 32090608 - 32090693
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaa 86  Q
    |||||| | |||||||||| |||| |||||||| ||||| | |||||||||||||||| ||| |||||||||||||| ||||||||    
T  32090608 tatgcaccctgcataaacaattcagaaccatcaaatctagtatacacgtgtaataatcataggcttctcaaactacaccaaatcaa 32090693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 48690925 - 48690991
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttc 67  Q
    |||||| |||||||||||| ||||||||||||| ||||| |||||||||||||||||| ||| ||||    
T  48690925 tatgcaccgtgcataaacagttcacaaccatcaaatctagtgtacacgtgtaataatcataggcttc 48690991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 44141286 - 44141226
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatccta 61  Q
    |||||| | ||||||||||||||||||||||| ||| || |||||||||||||||||||||    
T  44141286 tatgcaccctgcataaacacttcacaaccatctgatttagtgtacacgtgtaataatccta 44141226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 28396752 - 28396818
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttc 67  Q
    |||||| |||||||||||| ||||||| ||||||||||| |||||| | ||||||||||||| ||||    
T  28396752 tatgcaccgtgcataaacatttcacaatcatcagatctagtgtacaagagtaataatcctaggcttc 28396818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 48691112 - 48691162
Alignment:
Q  99 tcaaatatttctctcactaaaacataaagttctccctctatctctacaatt 149  Q
    ||||| ||||||||||||||||||||||| ||||||||| |||||||||||    
T  48691112 tcaaaaatttctctcactaaaacataaagctctccctctctctctacaatt 48691162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 12279775 - 12279836
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctag 62  Q
    |||||| |||||||||| ||||||||||||| ||||||| |||| ||||||||| |||||||    
T  12279775 tatgcaccgtgcataaagacttcacaaccattagatctagtgtatacgtgtaatgatcctag 12279836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 48305266 - 48305327
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctag 62  Q
    |||||| ||||||||||||||| |||| |||| |||||| ||||||||| ||||||||||||    
T  48305266 tatgcaccgtgcataaacactttacaaacatcggatctagtgtacacgtataataatcctag 48305327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 28396842 - 28396892
Alignment:
Q  99 tcaaatatttctctcactaaaacataaagttctccctctatctctacaatt 149  Q
    ||||| |||||||||| |||||||||||||||||||||| ||||| |||||    
T  28396842 tcaaacatttctctcaataaaacataaagttctccctctctctctgcaatt 28396892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 48305356 - 48305406
Alignment:
Q  99 tcaaatatttctctcactaaaacataaagttctccctctatctctacaatt 149  Q
    ||||| |||||||||| |||||||||||| ||||||||| |||||||||||    
T  48305356 tcaaacatttctctcaataaaacataaagctctccctctctctctacaatt 48305406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 12279671 - 12279732
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctag 62  Q
    |||||| |||| ||||| ||||||||||||| ||||| | |||||||||||||| |||||||    
T  12279671 tatgcaccgtgtataaagacttcacaaccattagatccagtgtacacgtgtaatgatcctag 12279732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 39
Target Start/End: Complemental strand, 27335655 - 27335626
Alignment:
Q  10 tgcataaacacttcacaaccatcagatcta 39  Q
    ||||||||||||||||||||||||||||||    
T  27335655 tgcataaacacttcacaaccatcagatcta 27335626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 151; Significance: 4e-80; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 18056814 - 18057009
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  18056814 tatgcaccgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgcttc 18056913  T
Q  101 aaatatttctctcactaaaacataaagttctccctctatctctacaattttcaacattctggaaaagaaaacgaagaactcagattagtcttcatctc 198  Q
    ||| ||||||||||||||||||||||  ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  18056914 aaacatttctctcactaaaacataaaactctccctc--tctctacaattttcaacattctggaaaagaaaacgaagaactcagatgagtctttatctc 18057009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 10 - 198
Target Start/End: Complemental strand, 23320111 - 23319923
Alignment:
Q  10 tgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttcaaatatttc 109  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||    
T  23320111 tgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctagacttctcaaactacaccaaatcaaacttcatttgctttaaacatttc 23320012  T
Q  110 tctcactaaaacataaagttctccctctatctctacaattttcaacattctggaaaagaaaacgaagaactcagattagtcttcatctc 198  Q
    |||||||||||||||||| | ||||||| ||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  23320011 tctcactaaaacataaagctatccctctttctctactattttcaaaattctggaaaagaaaacgaagaactcagatgagtcttcatctc 23319923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 8 - 198
Target Start/End: Original strand, 45889633 - 45889823
Alignment:
Q  8 cgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttcaaatatt 107  Q
    |||||||||||| || |||||||||||||||| | |||| ||||||||||| ||| |||||||||||||| ||||||||| ||||||| ||||||| |||    
T  45889633 cgtgcataaacattttacaaccatcagatctagtatacatgtgtaataatcttaggcttctcaaactacaccaaatcaaatttcatttccttcaaacatt 45889732  T
Q  108 tctctcactaaaacataaagttctccctctatctctacaattttcaacattctggaaaagaaaacgaagaactcagattagtcttcatctc 198  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||    
T  45889733 tctctcactaaaacataaagttctccctctctctctacaattttcaatattctgaaaaagaaaacgaagaactcagatgagtcttcatctc 45889823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 22348069 - 22348217
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| || ||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  22348069 tatgcaccgcgcataaacacttcacaaccatcatatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgcttc 22348168  T
Q  101 aaatatttctctcactaaaacataaagttctccctctatctctacaatt 149  Q
    ||| ||||||||||||||||||||||| ||||||||| |||||||||||    
T  22348169 aaacatttctctcactaaaacataaagctctccctctctctctacaatt 22348217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 9 - 149
Target Start/End: Original strand, 179646 - 179786
Alignment:
Q  9 gtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttcaaatattt 108  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| |  |||||||||||||| ||||||||||||||||||||| ||| ||||    
T  179646 gtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcccaagcttctcaaactacaccaaatcaaacttcatttgcttaaaacattt 179745  T
Q  109 ctctcactaaaacataaagttctccctctatctctacaatt 149  Q
    ||||||||||||||||||| ||||||||| |||||||||||    
T  179746 ctctcactaaaacataaagctctccctctctctctacaatt 179786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 10 - 143
Target Start/End: Complemental strand, 8402337 - 8402204
Alignment:
Q  10 tgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttcaaatatttc 109  Q
    ||||||||||||||| |||||||||||||| ||||||| ||||||||||||||  ||||||||||| | ||||||||||||||| ||||||||| |||||    
T  8402337 tgcataaacacttcataaccatcagatctagtgtacacatgtaataatcctaggtttctcaaactaaaccaaatcaaacttcatctgcttcaaacatttc 8402238  T
Q  110 tctcactaaaacataaagttctccctctatctct 143  Q
    |||||||||||||||||| |||| |||| |||||    
T  8402237 tctcactaaaacataaagctctctctctctctct 8402204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 30802437 - 30802535
Alignment:
Q  12 cataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttcaaatatttct 110  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  30802437 cataaacatttcacaaccatcagatctagtgtacacgtgtaataatcttaggcttctcaaactacaccaaatcaaacttcatttgcttcaaatatttct 30802535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 16115881 - 16115966
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaa 86  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||| ||||||||    
T  16115881 tatgcaccgtgcataaacacttcacaaccatcaaatctaatgtacacgtgtaataatccaagacttcttaaactacaccaaatcaa 16115966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 37639372 - 37639457
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaa 86  Q
    |||||| | |||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||| ||||||||    
T  37639372 tatgcaccctgcataaacacttcacaaccatcagatctagtgtacacgtgtaataattatagacttctcaaactacaccaaatcaa 37639457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 35198216 - 35198131
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaa 86  Q
    |||||| | ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||  |||||||    
T  35198216 tatgcaccctgcataaacacttcacagccatcagatctagtgtacacgtgtaataatcctagacttttcaaactacacaaaatcaa 35198131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 51420376 - 51420436
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctag 62  Q
    |||||||| |||||||||| |||||||||||||||| || | |||||| |||||||||||||    
T  51420376 tatgcatcctgcataaaca-ttcacaaccatcagatttattatacacgagtaataatcctag 51420436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 11421625 - 11421660
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagat 36  Q
    |||||| |||||||||||||||||||||||||||||    
T  11421625 tatgcaccgtgcataaacacttcacaaccatcagat 11421660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 34369691 - 34369726
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagat 36  Q
    |||||| |||||||||||||||||||||||||||||    
T  34369691 tatgcaccgtgcataaacacttcacaaccatcagat 34369726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 4097943 - 4097911
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatca 33  Q
    |||||| ||||||||||||||||||||||||||    
T  4097943 tatgcaccgtgcataaacacttcacaaccatca 4097911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 15260886 - 15260689
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| |||||||||||||||||||||||||| ||||| ||||||||| ||||||||| || |||||||||||||| ||||||||||||||||||||||    
T  15260886 tatgcaccgtgcataaacacttcacaaccatcaaatctagtgtacacgtttaataatccaaggcttctcaaactacaccaaatcaaacttcatttgcttc 15260787  T
Q  101 aaatatttctctcactaaaacataaagttctccctctatctctacaattttcaacattctggaaaagaaaacgaagaactcagattagtcttcatctc 198  Q
    |||||||||||||||||||| |||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  15260786 aaatatttctctcactaaaatataaaactctccctctctctctacaattttcaacattctggaaaagaaaacgaagaactcagatgagtcttcatctc 15260689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 32987480 - 32987286
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  32987480 tatgcaccgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgcttc 32987381  T
Q  101 aaatatttctctcactaaaacataaagttctccctctatctctacaattttcaacattctggaaaagaaaacgaagaactcagattagtcttcatct 197  Q
    ||| |||||||| |||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  32987380 aaacatttctctaactaaaacataaagctctccctc--tctctacaattttcaacattctggaaaagaaaacgaagaactcatatgagtcttcatct 32987286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 39022005 - 39022202
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| |||||||||||||||||||| ||||||||||| |||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  39022005 tatgcaccgtgcataaacacttcacaatcatcagatctagtgtacatgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgcttc 39022104  T
Q  101 aaatatttctctcactaaaacataaagttctccctctatctctacaattttcaacattctggaaaagaaaacgaagaactcagattagtcttcatctc 198  Q
    ||| |||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  39022105 aaacatttatctcactaaaacataaagctctccctctctctctacaattttcaacattctggaaaagaaaacgaagaacttagatgagtcttcatctc 39022202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 7058144 - 7058292
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7058144 tatgcaccgtgcataaacacttcacaaccatccgatctagtgtacacgtgtaataatcctagacttctcaaactacaccaaatcaaacttcatttgcttc 7058243  T
Q  101 aaatatttctctcactaaaacataaagttctccctctatctctacaatt 149  Q
    ||| | ||||||||||||||||||||| ||||||||| |||||||||||    
T  7058244 aaacacttctctcactaaaacataaagctctccctctctctctacaatt 7058292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 8550534 - 8550682
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||  ||||||||| |||| ||||||||||||||||||||||    
T  8550534 tatgcaccgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcataagcttctcaaattacaccaaatcaaacttcatttgcttc 8550633  T
Q  101 aaatatttctctcactaaaacataaagttctccctctatctctacaatt 149  Q
    ||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  8550634 aaacatttctctcactaaaacataaagttctccctctttctctacaatt 8550682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 4836736 - 4836588
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||| |||||||||| ||||||||||||||||||||||    
T  4836736 tatgcaccgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaagcttttcaaactacaccaaatcaaacttcatttgcttc 4836637  T
Q  101 aaatatttctctcactaaaacataaagttctccctctatctctacaatt 149  Q
    ||| |||| |||||||||||||||||| ||||||||| |||||||||||    
T  4836636 aaacatttatctcactaaaacataaagctctccctctctctctacaatt 4836588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 4842181 - 4842033
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||| |||||||||| ||||||||||||||||||||||    
T  4842181 tatgcaccgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaagcttttcaaactacaccaaatcaaacttcatttgcttc 4842082  T
Q  101 aaatatttctctcactaaaacataaagttctccctctatctctacaatt 149  Q
    ||| |||| |||||||||||||||||| ||||||||| |||||||||||    
T  4842081 aaacatttatctcactaaaacataaagctctccctctctctctacaatt 4842033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 7614098 - 7614207
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||    
T  7614098 tatgcaccatgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcataggcttctcaaactacaccaaatcaaacttcatttgcttc 7614197  T
Q  101 aaatatttct 110  Q
    ||| ||||||    
T  7614198 aaacatttct 7614207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 47 - 136
Target Start/End: Original strand, 2750101 - 2750190
Alignment:
Q  47 cgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttcaaatatttctctcactaaaacataaagttctccctc 136  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||| ||| ||| ||||||||||||||||||||| | ||||||||    
T  2750101 cgtgtaataatcatagacttctcaaactacaccaaatcaaacttcatttactttaaacatttctctcactaaaacataatgctctccctc 2750190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 15181821 - 15181906
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaa 86  Q
    |||||| | |||||||||||||||||| ||||||||||| |||||||||||||||||| |||  ||||||||||||| ||||||||    
T  15181821 tatgcaccctgcataaacacttcacaagcatcagatctagtgtacacgtgtaataatcttaggtttctcaaactacaccaaatcaa 15181906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 1208739 - 1208805
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttc 67  Q
    |||||| ||||||||||||||| |||||||| ||||||| |||||||||||||||||||||| ||||    
T  1208739 tatgcaccgtgcataaacactttacaaccataagatctagtgtacacgtgtaataatcctaggcttc 1208805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 1208829 - 1208877
Alignment:
Q  99 tcaaatatttctctcactaaaacataaagttctccctctatctctacaatt 149  Q
    ||||| ||||||||||||||||||||||| ||||||||  |||||||||||    
T  1208829 tcaaacatttctctcactaaaacataaagctctccctc--tctctacaatt 1208877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 4168388 - 4168585
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||  ||||||||||||| |||||||||||||||||| |||    
T  4168388 tatgcaccgtgcataaacacttcacaaccatcagatctagtgtacacatgtaataatcctaggtttctcaaactacaccaaatcaaacttcatttgtttc 4168487  T
Q  101 aaatatttctctcactaaaacataaagttctccctctatctctacaattttcaacattctggaaaagaaaacgaagaactcagattagtcttcatctc 198  Q
    ||| ||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4168488 aaacatttctctcactaaaacataaagctttcactctatctctacaattttcaacattctggaaaagaaaacgaagaactcagatgagtcttcatctc 4168585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 21097170 - 21097367
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| |||| ||||||||||||||||||| ||||||| | ||||||||||||||| |||  ||| | ||| |||| ||||||||||||||||||||||    
T  21097170 tatgcaccgtgtataaacacttcacaaccattagatctagtttacacgtgtaataattctaagcttattaaattacaccaaatcaaacttcatttgcttc 21097269  T
Q  101 aaatatttctctcactaaaacataaagttctccctctatctctacaattttcaacattctggaaaagaaaacgaagaactcagattagtcttcatctc 198  Q
    ||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  21097270 aaacatttctctcactaaaacataaagctctccctctctctctacaattttcaacattctggaaaagaaaacgaagaactcagatgagtcttcatctc 21097367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 38485709 - 38485510
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||    
T  38485709 tatgcaccgtgcataaacgcttcacaaccatcagatctaatgtacacgtgtaataatcctaggcttctcaaaatacattaaatcaaacttcatttgcttc 38485610  T
Q  101 aaatatttctctcact--aaaacataaagttctccctctatctctacaattttcaacattctggaaaagaaaacgaagaactcagattagtcttcatctc 198  Q
    ||| ||||||||||||  ||||||||||| ||||||||| |||||||||||||||| ||| ||||||| |||||||| |||||| || ||||||||||||    
T  38485609 aaacatttctctcactaaaaaacataaagatctccctctctctctacaattttcaatattatggaaaaaaaaacgaaaaactcatatgagtcttcatctc 38485510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 22181280 - 22181084
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| |||||||||| |||||||||||||||||| || ||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||| ||    
T  22181280 tatgcaccgtgcataaaaacttcacaaccatcagatttagtgtacacgtgtaataatcctaggtttctcaaactacaccaaatcaaacttcatttgcctc 22181181  T
Q  101 aaatatttctctcactaaaacataaagttctccctctatctctacaattttcaacattctggaaaagaaaacgaagaactcagattagtcttcatctc 198  Q
    ||| ||||||||||||||||||||||| | | ||||| ||||||||| |||||||||||||||||||||||||||||||||| || ||| ||||||||    
T  22181180 aaacatttctctcactaaaacataaagcttttcctctctctctacaa-tttcaacattctggaaaagaaaacgaagaactcaaatgagttttcatctc 22181084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 27764270 - 27764472
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||  |||||||||||||| |||||||||| | |||||||||    
T  27764270 tatgcaccgtgcataaacacttcgcaaccatcagatctagtgtacacgtgtaataatcctacgcttctcaaactacaccaaatcaaaccttatttgcttc 27764369  T
Q  101 aaatatttctctcactaaaacataaagttctcc--ctctatctctacaattttcaacattctggaaaagaaaac---gaagaactcagattagtcttcat 195  Q
    ||| |||||||||||||||||||||||||||||  |||| ||||| ||||||||||||||||| ||||||||||   |||||| |||||| |||||||||    
T  27764370 aaacatttctctcactaaaacataaagttctccctctctctctctccaattttcaacattctgaaaaagaaaacgaagaagaattcagatgagtcttcat 27764469  T
Q  196 ctc 198  Q
    |||    
T  27764470 ctc 27764472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 26447447 - 26447299
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||| |||| |||| ||||||||| ||||||||||||    
T  26447447 tatgcaccgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataattctaggcttcacaaattacaccaaatcaaatttcatttgcttc 26447348  T
Q  101 aaatatttctctcactaaaacataaagttctccctctatctctacaatt 149  Q
    ||| ||||||||||||||||||||||||||||||||| ||| |||||||    
T  26447347 aaacatttctctcactaaaacataaagttctccctctctctatacaatt 26447299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 637884 - 638031
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||  ||| |||||||||||||| ||||||||||||||||||||||    
T  637884 tatgcaccgtgcataaacacttcacaaccatcagatctagtgtacatgtgtaataattttaggcttctcaaactacaccaaatcaaacttcatttgcttc 637983  T
Q  101 aaatatttctctcactaaaacataaagttctccctctatctctacaattt 150  Q
    ||| ||||||||||||||||||||||| ||||||||  ||||||||||||    
T  637984 aaacatttctctcactaaaacataaagctctccctc--tctctacaattt 638031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 5 - 149
Target Start/End: Complemental strand, 51837122 - 51836977
Alignment:
Q  5 catcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttca-tttgcttcaaa 103  Q
    ||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| |||||||    
T  51837122 catcgagcataaatacttcacaaccatcagatttaatgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcattttacttcaaa 51837023  T
Q  104 tatttctctcactaaaacataaagttctccctctatctctacaatt 149  Q
     ||||||||||||||||||||||| ||||||||| |||||||||||    
T  51837022 catttctctcactaaaacataaagctctccctctctctctacaatt 51836977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 45256005 - 45256155
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| ||||||||||||||||||||| ||||||| || |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  45256005 tatgcaccgtgcataaacacttcacaactatcagatatagtgtacacgtgtaataatcctaggcttttcaaactacatcaaatcaaacttcatttgcttc 45256104  T
Q  101 aaatatttctctcactaaaacataaagtt--ctccctctatctctacaatt 149  Q
    ||| ||||||||||||||||||||||| |  | |||||| |||||||||||    
T  45256105 aaacatttctctcactaaaacataaagctccccccctctctctctacaatt 45256155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 64 - 198
Target Start/End: Original strand, 18923352 - 18923484
Alignment:
Q  64 cttctcaaactacatcaaatcaaacttcatttgcttcaaatatttctctcactaaaacataaagttctccctctatctctacaattttcaacattctgga 163  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||  | ||||||  ||||||||||||||||||||||| |    
T  18923352 cttctcaaactacaccaaatcaaacttcatttgcttcaaatatttctgtcactaaaacataaaactatccctc--tctctacaattttcaacattctgaa 18923449  T
Q  164 aaagaaaacgaagaactcagattagtcttcatctc 198  Q
    |||||||||||||||||||||| ||||||||||||    
T  18923450 aaagaaaacgaagaactcagatgagtcttcatctc 18923484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 36621736 - 36621627
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||| ||||||||||||||||||||||    
T  36621736 tatgcaccgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctatgcttcttaaactacaccaaatcaaacttcatttgcttc 36621637  T
Q  101 aaatatttct 110  Q
    ||| ||||||    
T  36621636 aaacatttct 36621627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 50563764 - 50563679
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaa 86  Q
    |||||| | |||||||||||||||||||||||||||||| |||||||||||||||||  |||  ||||||||||||| ||||||||    
T  50563764 tatgcaccctgcataaacacttcacaaccatcagatctagtgtacacgtgtaataattataggtttctcaaactacaccaaatcaa 50563679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 6386567 - 6386516
Alignment:
Q  10 tgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatccta 61  Q
    ||||||||||||||||||||||||||| || || ||||||||||||||||||    
T  6386567 tgcataaacacttcacaaccatcagatttagtggacacgtgtaataatccta 6386516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 1729643 - 1729604
Alignment:
Q  8 cgtgcataaacacttcacaaccatcagatctaatgtacac 47  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  1729643 cgtgcataaacacttcacaaccatcagatctagtgtacac 1729604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 26578224 - 26578189
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagat 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  26578224 tatgcatcgtgcataaacacttcacaaccatcagat 26578189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 48077859 - 48077817
Alignment:
Q  41 tgtacacgtgtaataatcctagacttctcaaactacatcaaat 83  Q
    |||||| ||||||||||||||| |||||||||||||| |||||    
T  48077859 tgtacatgtgtaataatcctaggcttctcaaactacaccaaat 48077817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 53441351 - 53441383
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatca 33  Q
    |||||||||||||||||||| ||||||||||||    
T  53441351 tatgcatcgtgcataaacacatcacaaccatca 53441383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 8 - 198
Target Start/End: Original strand, 27644 - 27834
Alignment:
Q  8 cgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttcaaatatt 107  Q
    ||||||||||||||||||||| || ||||||| ||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||| |||    
T  27644 cgtgcataaacacttcacaactataagatctagtgtacacgtgtaataattctaggcttctcaaactacaccaaatcaaacttcatttgcttcaaacatt 27743  T
Q  108 tctctcactaaaacataaagttctccctctatctctacaattttcaacattctggaaaagaaaacgaagaactcagattagtcttcatctc 198  Q
    |||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  27744 tctctcactaaaacataaatctctccctctttctctacaattttcaacattctggaaaagaaaacgaagaactcagatgagtcttcatctc 27834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 8 - 198
Target Start/End: Original strand, 13650 - 13838
Alignment:
Q  8 cgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttcaaatatt 107  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||||  |||||||||||||| ||||||||||||||||||||||||| |||    
T  13650 cgtgcataaacacttcacaaccatcagatctagtgtacacatgtaataatcctacgcttctcaaactacaccaaatcaaacttcatttgcttcaaacatt 13749  T
Q  108 tctctcactaaaacataaagttctccctctatctctacaattttcaacattctggaaaagaaaacgaagaactcagattagtcttcatctc 198  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||    
T  13750 tctctcactaaaacataaagttctccctc--tctctacaattttcaactctctggaaaagaaaacgaagaactcagatgagtcttcatctc 13838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 144; Significance: 7e-76; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 8 - 198
Target Start/End: Original strand, 20709811 - 20709999
Alignment:
Q  8 cgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttcaaatatt 107  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||||  |||||||||||||| ||||||||||||||||||||||||| |||    
T  20709811 cgtgcataaacacttcacaaccatcagatctagtgtacacatgtaataatcctacgcttctcaaactacaccaaatcaaacttcatttgcttcaaacatt 20709910  T
Q  108 tctctcactaaaacataaagttctccctctatctctacaattttcaacattctggaaaagaaaacgaagaactcagattagtcttcatctc 198  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||    
T  20709911 tctctcactaaaacataaagttctccctc--tctctacaattttcaactctctggaaaagaaaacgaagaactcagatgagtcttcatctc 20709999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 18298146 - 18297997
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  18298146 tatgcaccgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgcttc 18298047  T
Q  101 aaatatttctctcactaaaacataaagttctccctctatctctacaattt 150  Q
    ||   |||||||||||||||||||||  ||||||||| ||||||||||||    
T  18298046 aagcgtttctctcactaaaacataaatctctccctctctctctacaattt 18297997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 25192922 - 25193070
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||| |||| ||||||||| |||| ||||||||||||||||||||||    
T  25192922 tatgcaccgtgcataaacacttcacaaccattagatctagtgtacacgtgtaataattctaggcttctcaaattacaccaaatcaaacttcatttgcttc 25193021  T
Q  101 aaatatttctctcactaaaacataaagttctccctctatctctacaatt 149  Q
    ||| ||||||||||||||||||||||| ||||||||| |||||||||||    
T  25193022 aaacatttctctcactaaaacataaagctctccctctctctctacaatt 25193070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 4281811 - 4281738
Alignment:
Q  13 ataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaa 86  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||| ||||||||    
T  4281811 ataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggtttctcaaactacagcaaatcaa 4281738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 25995326 - 25995402
Alignment:
Q  10 tgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaa 86  Q
    |||||||| |||||||||||||||||| || |||||||||||||||||||||| || |||||| |||| ||||||||    
T  25995326 tgcataaatacttcacaaccatcagatttagtgtacacgtgtaataatcctaggctactcaaattacaccaaatcaa 25995402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 14551347 - 14551288
Alignment:
Q  8 cgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttc 67  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||    
T  14551347 cgtgcataaacacttcacaaccatcagatctagtgtacatgtgtaataatcctaggcttc 14551288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 4579853 - 4579796
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatc 58  Q
    |||||| | ||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  4579853 tatgcaccatgcataaacactttacaaccatcagatctagtgtacacgtgtaataatc 4579796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 5098747 - 5098808
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctag 62  Q
    |||||| | |||||||||||||||||||||||| || || ||||||||||||||||||||||    
T  5098747 tatgcaccctgcataaacacttcacaaccatcaaatttattgtacacgtgtaataatcctag 5098808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 149
Target Start/End: Complemental strand, 4579763 - 4579713
Alignment:
Q  99 tcaaatatttctctcactaaaacataaagttctccctctatctctacaatt 149  Q
    ||||| ||||||||||||||||||||||| ||||||||| |||||||||||    
T  4579763 tcaaacatttctctcactaaaacataaagctctccctctctctctacaatt 4579713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 36636961 - 36636912
Alignment:
Q  12 cataaacacttcacaaccatcagatctaatgtacacgtgtaataatccta 61  Q
    ||||||||||||||||||||||||| |  | |||||||||||||||||||    
T  36636961 cataaacacttcacaaccatcagatttgttttacacgtgtaataatccta 36636912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 8149862 - 8149897
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagat 36  Q
    |||||||||||||||||||| |||||||||||||||    
T  8149862 tatgcatcgtgcataaacacatcacaaccatcagat 8149897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 8154486 - 8154521
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagat 36  Q
    |||||||||||||||||||| |||||||||||||||    
T  8154486 tatgcatcgtgcataaacacatcacaaccatcagat 8154521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 43822409 - 43822445
Alignment:
Q  26 aaccatcagatctaatgtacacgtgtaataatcctag 62  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  43822409 aaccatcagatctagtgtacacgtgtgataatcctag 43822445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 23335742 - 23335542
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||| ||||||||| ||||||||| ||    
T  23335742 tatgcaccgtgcataaacatttcacaaccatcagatctagtgtacacgtgtaataatcataggcttctcaaactacaccaaatcaaagttcatttgcatc 23335643  T
Q  101 aaatatttctctcact-aaaacataaagttctcc--ctctatctctacaattttcaacattctggaaaagaaaacgaagaactcagattagtcttcatct 197  Q
    ||| |||||||||||| ||||||||||| |||||  |||| |||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||    
T  23335642 aaacatttctctcactaaaaacataaagctctccctctctctctctacaattttcaacattatggaaaagaaaacaaagaactcagatgagtcttcatct 23335543  T
Q  198 c 198  Q
    |    
T  23335542 c 23335542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 13362800 - 13362999
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||| ||| |||||||||||||| ||||||||| ||||||||||||    
T  13362800 tatgcaccgtgcataaacacttcacaaccatcagatctagtgtatacgtgtaataatcataggcttctcaaactacaccaaatcaaaattcatttgcttc 13362899  T
Q  101 aaatatttctctcactaaaacataaagttctcc--------ctctatctctacaattttcaacattctggaaaagaaaacgaagaactcagattagtctt 192  Q
    ||| ||||||||||||||||||||||| | |||        |||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  13362900 aaacatttctctcactaaaacataaagctttccctctgtctctctctctctacaattttcaacattctggaaaagaaaacgaagaactcaaatgagtctt 13362999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 28070188 - 28070057
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28070188 tatgcaccgtgcataaacacttcacaactatcagatctagtgtacacgtgtaataatcctagacttctcaaactacaccaaatcaaacttcatttgcttc 28070089  T
Q  101 aaatatttctctcactaaaacataaagttctc 132  Q
    ||| ||||||||||||||||||||||| ||||    
T  28070088 aaacatttctctcactaaaacataaagctctc 28070057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 25017252 - 25017072
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||  |||  ||||||||||               |||||||||||    
T  25017252 tatgcaccgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataattttaggtttctcaaact---------------tcatttgcttc 25017168  T
Q  101 aaatatttctctcactaaaacataaagttctccctctatctctacaattttcaacattctggaaaagaaaacgaagaactcagattagtcttcatctc 198  Q
    ||| ||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  25017167 aaacatttctctcactaaaacataaagctctccctct--ctctacaattttcaacattctggaaaagaaaacgaagtactcagatgagtcttcatctc 25017072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 70 - 185
Target Start/End: Original strand, 42512273 - 42512388
Alignment:
Q  70 aaactacatcaaatcaaacttcatttgcttcaaatatttctctcactaaaacataaagttctccctctatctctacaattttcaacattctggaaaagaa 169  Q
    |||||||| ||||||||||||||||| ||||||| ||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||    
T  42512273 aaactacaccaaatcaaacttcatttacttcaaacatttctctcactaaaacctaaagctctccctctctctctacaattttcaacattctggaaaagaa 42512372  T
Q  170 aacgaagaactcagat 185  Q
    ||||||||||||||||    
T  42512373 aacgaagaactcagat 42512388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 2827095 - 2826956
Alignment:
Q  8 cgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttcaaatatt 107  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||| ||| ||| |||||||||||||| ||||||||| ||||||||||||||| |||    
T  2827095 cgtgcataaacactttacaaccatcagatctagtgtacacgtgtaattatcttaggcttctcaaactacaccaaatcaaatttcatttgcttcaaacatt 2826996  T
Q  108 tctctcactaaaacataaagttctccctctatctctacaatt 149  Q
    | |||||||||||||||||| ||||||||  |||||||||||    
T  2826995 tatctcactaaaacataaagctctccctc--tctctacaatt 2826956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 18465591 - 18465506
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaa 86  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||    
T  18465591 tatgcatcctgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcttagacttctcaaactacaccaaatcaa 18465506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 16668829 - 16668743
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaa 87  Q
    |||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||    
T  16668829 tatgcaccctgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaa 16668743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 34329157 - 34329223
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttc 67  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||  |||||||| ||| ||||    
T  34329157 tatgcaccgtgcataaacacttcacaaccatcagatctagtgtacacgaataataatcataggcttc 34329223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 8948930 - 8949003
Alignment:
Q  11 gcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaa 86  Q
    |||||||||||||| ||| ||||||| || ||||||||||  |||||||||| |||||||||||||| ||||||||    
T  8948930 gcataaacacttcaaaactatcagatttagtgtacacgtg--ataatcctaggcttctcaaactacaccaaatcaa 8949003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 33868186 - 33868247
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctag 62  Q
    |||||| | ||||||||||||||||||||||| ||| || | |||| |||||||||||||||    
T  33868186 tatgcaccctgcataaacacttcacaaccatctgatttattttacatgtgtaataatcctag 33868247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 39
Target Start/End: Original strand, 42512236 - 42512267
Alignment:
Q  8 cgtgcataaacacttcacaaccatcagatcta 39  Q
    ||||||||||||||||||||||||||||||||    
T  42512236 cgtgcataaacacttcacaaccatcagatcta 42512267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 1e-64; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 52987685 - 52987537
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  52987685 tatgcaccgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgcttc 52987586  T
Q  101 aaatatttctctcactaaaacataaagttctccctctatctctacaatt 149  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  52987585 aaatatttctctcactaaaacataaagctctccctctctctctacaatt 52987537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 8718131 - 8718336
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| ||| |||||| ||||||||||||||||||||| |||||| ||||||||||||||| ||||| |||||||| |||||||||||||||||| ||     
T  8718131 tatgcaccgtacataaatacttcacaaccatcagatctagtgtacatgtgtaataatcctaggcttcttaaactacaccaaatcaaacttcatttgttta 8718230  T
Q  101 aaatatttctctcactaaaacataaag--------ttctccctctatctctacaattttcaacattctggaaaagaaaacgaagaactcagattagtctt 192  Q
    ||| |||||||||||||||||||||||         |||| |||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  8718231 aaacatttctctcactaaaacataaagctttccctctctctctctctctctacaattttcaacattctggaaaagaaaacgaagaaatcagatgagtctt 8718330  T
Q  193 catctc 198  Q
    ||||||    
T  8718331 catctc 8718336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 9070018 - 9070223
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| ||| |||||| ||||||||||||||||||||| |||||| ||||||||||||||| ||||| |||||||| |||||||||||||||||| ||     
T  9070018 tatgcaccgtacataaatacttcacaaccatcagatctagtgtacatgtgtaataatcctaggcttcttaaactacaccaaatcaaacttcatttgttta 9070117  T
Q  101 aaatatttctctcactaaaacataaag--------ttctccctctatctctacaattttcaacattctggaaaagaaaacgaagaactcagattagtctt 192  Q
    ||| |||||||||||||||||||||||         |||| |||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  9070118 aaacatttctctcactaaaacataaagctttccctctctctctctctctctacaattttcaacattctggaaaagaaaacgaagaaatcagatgagtctt 9070217  T
Q  193 catctc 198  Q
    ||||||    
T  9070218 catctc 9070223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 39099227 - 39099413
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| |||||||||| | ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||  ||||||||||||||||| ||     
T  39099227 tatgcaccgtgcataaatatttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacactaaatcaaacttcatttgttta 39099326  T
Q  101 aaatatttctctcactaaaacataaagttctcc--ctctatctctacaattttcaacattctggaaaagaaaacgaagaactcagat 185  Q
    ||| ||||||||||||||||||||||| |||||  |||| |||||||||||||||||||||| ||| | |||| |||||||||||||    
T  39099327 aaacatttctctcactaaaacataaagctctccctctctttctctacaattttcaacattctcgaagaaaaaatgaagaactcagat 39099413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 51362473 - 51362326
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  51362473 tatgcaccgtgcataaacacttcacaaccatcagatttagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgcttc 51362374  T
Q  101 aaatatttctctcactaaaacataaagttctccctctatctctacaatt 149  Q
    ||| |||||||||||||||||||||| || ||||||| |||||||||||    
T  51362373 aaacatttctctcactaaaacataaactt-tccctctctctctacaatt 51362326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 50754036 - 50754182
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||    
T  50754036 tatgcaccgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgattc 50754135  T
Q  101 aaatatttctctcactaaaacataaagttctccctctatctctacaatt 149  Q
    ||| | ||||||||||||||||||||| ||||||||  |||||||||||    
T  50754136 aaacacttctctcactaaaacataaagctctccctc--tctctacaatt 50754182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 7045335 - 7045188
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||| ||||||||||||||||||| |||||||||    
T  7045335 tatgcaccgtgtataaacacttcacaaccatcagatctagtgtacacgtgtaataatcgtaggcttctcagactacatcaaatcaaactt-atttgcttc 7045237  T
Q  101 aaatatttctctcactaaaacataaagttctccctctatctctacaatt 149  Q
    ||| ||||||||||||||||||||||| ||||||||| |||||||||||    
T  7045236 aaacatttctctcactaaaacataaagctctccctctctctctacaatt 7045188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 19385350 - 19385214
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  19385350 tatgcaccgtgcataaacacttcacaaccatcagatttagtgtacacgtgtaataattctaggcttctcaaactacatcaaatcaaacttcatttgcttc 19385251  T
Q  101 aaatatttctctcactaaaacataaagttctccctct 137  Q
    ||  ||||| ||||||||||||||||  |||||||||    
T  19385250 aatcatttccctcactaaaacataaaactctccctct 19385214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 16277449 - 16277342
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||  |||||||||||||| |||||||||||||||||| |||    
T  16277449 tatgcaccgtgcataaacacttcacaaccatcatatctagtgtacacgtgtaataatcctacgcttctcaaactacaccaaatcaaacttcatttgtttc 16277350  T
Q  101 aaatattt 108  Q
    ||| ||||    
T  16277349 aaacattt 16277342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 23699367 - 23699443
Alignment:
Q  10 tgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaa 86  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  23699367 tgcataaacacttcacaaccatcatatctaatgtacacgtgtaataatcctaggcttttcaaactacatcaaatcaa 23699443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 23717822 - 23717898
Alignment:
Q  10 tgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaa 86  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  23717822 tgcataaacacttcacaaccatcatatctaatgtacacgtgtaataatcctaggcttttcaaactacatcaaatcaa 23717898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 23736278 - 23736354
Alignment:
Q  10 tgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaa 86  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  23736278 tgcataaacacttcacaaccatcatatctaatgtacacgtgtaataatcctaggcttttcaaactacatcaaatcaa 23736354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 17627258 - 17627205
Alignment:
Q  9 gtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctag 62  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  17627258 gtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataattctag 17627205  T

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Target: chr3; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 23755316 - 23755394
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaa 86  Q
    |||||| | ||||||||||||||||||||       |||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  23755316 tatgcaccctgcataaacacttcacaacc-------ctaatgtacacgtgtaataatcctaggcttctcaaattacatcaaatcaa 23755394  T

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Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 146
Target Start/End: Original strand, 31852242 - 31852281
Alignment:
Q  107 ttctctcactaaaacataaagttctccctctatctctaca 146  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  31852242 ttctctcactaaaacataaagttctccctctctctctaca 31852281  T

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Target: chr6 (Bit Score: 109; Significance: 5e-55; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 33346406 - 33346258
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||  ||| ||||||||||||| |||||||||||||| ||||||||    
T  33346406 tatgcaccgtgcataaacacttcacaaccatcaaatctagtgtacacgtgtaataattataggcttctcaaactacgtcaaatcaaacttcgtttgcttc 33346307  T
Q  101 aaatatttctctcactaaaacataaagttctccctctatctctacaatt 149  Q
    ||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  33346306 aaacatttctctcactaaaacataaagttctccctctctctctacaatt 33346258  T

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Target: chr6; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 24737726 - 24737580
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||    
T  24737726 tatgcaccgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttcttaaactacaccaaatcaaacttcatttgcttc 24737627  T
Q  101 aaatatttctctcactaaaacataaagttctccctctatctctacaatt 149  Q
    ||| ||||||||||||||||||||||  ||||||||  |||||||||||    
T  24737626 aaacatttctctcactaaaacataaaactctccctc--tctctacaatt 24737580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 9 - 149
Target Start/End: Original strand, 877246 - 877384
Alignment:
Q  9 gtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttcaaatattt 108  Q
    ||||||||||||||||||||||| |||||   ||||||||| |||||||| ||  |||||||||||||| ||||||||||||||||||||||||| ||||    
T  877246 gtgcataaacacttcacaaccattagatcaggtgtacacgtataataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 877345  T
Q  109 ctctcactaaaacataaagttctccctctatctctacaatt 149  Q
    |||||||||||||| |||| ||||||||  |||||||||||    
T  877346 ctctcactaaaacaaaaagctctccctc--tctctacaatt 877384  T

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Target: chr6; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 29157256 - 29157341
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaa 86  Q
    |||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||| |||| |||||||||||||| ||||||||    
T  29157256 tatgcaccgtgcataaacactttacaaccatcagatctagtgtacacgtgtaataatactaggcttctcaaactacaccaaatcaa 29157341  T

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Target: chr6; HSP #5
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 18611228 - 18611304
Alignment:
Q  10 tgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaa 86  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||| ||| ||||||||    
T  18611228 tgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcataggcttctcaaaccacaccaaatcaa 18611304  T

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Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 34399683 - 34399740
Alignment:
Q  13 ataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctca 70  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||    
T  34399683 ataaacacttcacaatcatcagatctagtgtacacgtgtaataatcctaggcttctca 34399740  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 35119265 - 35119310
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtaca 46  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||    
T  35119265 tatgcaccgtgcataaacacttcacaaccatcagatctagtgtaca 35119310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 15035010 - 15034942
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctc 69  Q
    |||||| ||||||||||   ||||||||||||||||||| |||||| ||||||||||| ||| ||||||    
T  15035010 tatgcaccgtgcataaatcattcacaaccatcagatctagtgtacatgtgtaataatcataggcttctc 15034942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 25267 - 25148
Alignment:
Q  1 tatgcatcgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttc 100  Q
    |||||| ||||||||||||||||||||||||||||| || ||||||||||| |||||| |||  ||||||||||||| ||||||||||||||||||||||    
T  25267 tatgcaccgtgcataaacacttcacaaccatcagatttagtgtacacgtgtcataatcttaggtttctcaaactacaccaaatcaaacttcatttgcttc 25168  T
Q  101 aaatatttctctcactaaaa 120  Q
    ||| ||||||||||||||||    
T  25167 aaacatttctctcactaaaa 25148  T

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Target: scaffold0337 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 7054 - 7108
Alignment:
Q  8 cgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctag 62  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  7054 cgtgcataaacacttcacaaccatcagatctagtgtacacatgtaataatcctag 7108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 10703 - 10649
Alignment:
Q  8 cgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctag 62  Q
    |||||||||||||||||||||||||||||||| ||| ||  ||||||||||||||    
T  10703 cgtgcataaacacttcacaaccatcagatctagtgtgcatatgtaataatcctag 10649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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