View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18836_high_10 (Length: 385)
Name: NF18836_high_10
Description: NF18836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18836_high_10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 385
Target Start/End: Original strand, 44621451 - 44621813
Alignment:
| Q |
18 |
gtaacaatataaaaatgcaagaagcggtaaaattaaattgctttcggagtaaatattgttggatcatcaatccaacattggacttgtattttaaaaatca |
117 |
Q |
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| T |
44621451 |
gtaacaatataaaaatgcaagaagcggtaaaattaaattgctttcggagtaaatattgttggatcatcaatccaacattggacttgtattttaaaaatca |
44621550 |
T |
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| Q |
118 |
tgtgtgtagactgccacttaagttgaagtccaattaaaagtgatctaaaaaggtttggttaatatgggcttataagtatctaatagggtgtgggccaggg |
217 |
Q |
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| T |
44621551 |
tgtgtgtcgactgccacttaagttgaagtccaattaaaagtgattta----ggtttggttaatatgggcttataagtatctaatagggtgtgggccaggg |
44621646 |
T |
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| Q |
218 |
ttctatatagagagagaagttatggtctccagatcacgcgtgcttgcagctgttattttttgactacctatatcagaagaagatagagaaataactaagg |
317 |
Q |
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| T |
44621647 |
ttctatatagagagagaagttatggtctccagatcacgcgtgcttgcagctgttattttttgactacctatatcagaagaagatagagaaataattaagg |
44621746 |
T |
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| Q |
318 |
gttttttcagagagaatgtgtttttatctggaaggccaaaaccaccaaatatttgttcattatgaatt |
385 |
Q |
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| T |
44621747 |
gttctttcagagagaatgtgtgttgatctggaaggcc-aaaccaccaaatatttgttcatcatgaatt |
44621813 |
T |
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