View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18836_high_12 (Length: 360)

Name: NF18836_high_12
Description: NF18836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18836_high_12
NF18836_high_12
[»] chr3 (2 HSPs)
chr3 (19-147)||(48118355-48118485)
chr3 (225-269)||(48118234-48118279)
[»] chr7 (3 HSPs)
chr7 (19-147)||(10208361-10208491)
chr7 (310-345)||(10208707-10208742)
chr7 (225-274)||(10208566-10208616)
[»] chr1 (4 HSPs)
chr1 (57-143)||(33357892-33357978)
chr1 (14-60)||(33357817-33357863)
chr1 (310-345)||(33358417-33358452)
chr1 (225-269)||(33358243-33358288)
[»] chr6 (2 HSPs)
chr6 (89-147)||(8891189-8891247)
chr6 (89-147)||(8908672-8908730)
[»] chr5 (1 HSPs)
chr5 (93-147)||(40883278-40883332)
[»] chr4 (1 HSPs)
chr4 (89-133)||(51035026-51035070)


Alignment Details
Target: chr3 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 48118485 - 48118355
Alignment:
Q  19 gaagaataaaaggtgaatgaaaaagaggtttacattgtgagac--gtagttacttttgaaacccatagttacaaccgctcaaatcaaagatgtttcattc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||| |||||| |  ||||||||| |||| | |||||||||||    
T  48118485 gaagaataaaaggtgaatgaaaaagaggtttacattgtgagagaggtagttacttttgaaatccataggtgtaaccgctcagatcacaaatgtttcattc 48118386  T
Q  117 tcaatttttaacagcaatcattgctttagag 147  Q
    ||||||||||| |||||||||||||||||||    
T  48118385 tcaatttttaatagcaatcattgctttagag 48118355  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 269
Target Start/End: Complemental strand, 48118279 - 48118234
Alignment:
Q  225 tcaaggaatattgtgagaaatatg-aagacatgatgattacctcaa 269  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||    
T  48118279 tcaaggaatattgtgagaaacatgaaagacatgatgattacctcaa 48118234  T

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Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 10208361 - 10208491
Alignment:
Q  19 gaagaataaaaggtgaatgaaaaagaggtttacattgtgagac--gtagttacttttgaaacccatagttacaaccgctcaaatcaaagatgtttcattc 116  Q
    |||||| | ||||| |||||||||||||||||||||||||||   ||||||||||| ||||||||||| |  |||||||||||||  | |||||| ||||    
T  10208361 gaagaacagaaggttaatgaaaaagaggtttacattgtgagagaggtagttactttcgaaacccataggtgtaaccgctcaaatcgcaaatgtttgattc 10208460  T
Q  117 tcaatttttaacagcaatcattgctttagag 147  Q
    ||||||||||| |||||||||||||||||||    
T  10208461 tcaatttttaatagcaatcattgctttagag 10208491  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 310 - 345
Target Start/End: Original strand, 10208707 - 10208742
Alignment:
Q  310 gagtttgagtcatgtctttgaatttattgagaaatt 345  Q
    ||||||||||||||||||||||||||||||||||||    
T  10208707 gagtttgagtcatgtctttgaatttattgagaaatt 10208742  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 274
Target Start/End: Original strand, 10208566 - 10208616
Alignment:
Q  225 tcaaggaatattgtgagaaatatg-aagacatgatgattacctcaacaaca 274  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||| ||||    
T  10208566 tcaaggaatattgtgagaaacatgaaagacatgatgattacctcaaaaaca 10208616  T

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Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 57 - 143
Target Start/End: Original strand, 33357892 - 33357978
Alignment:
Q  57 gagacgtagttacttttgaaacccatagttacaaccgctcaaatcaaagatgtttcattctcaatttttaacagcaatcattgcttt 143  Q
    |||| ||||| ||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33357892 gagaggtagtgacttttgaaacccataggtgtaaccgctcaaatcaaagatgtttcattctcaatttttatcagcaatcattgcttt 33357978  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 33357817 - 33357863
Alignment:
Q  14 gagatgaagaataaaaggtgaatgaaaaagaggtttacattgtgaga 60  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  33357817 gagaagaagaataaaaggtgaatgaaaaagaggtttacattgtgaga 33357863  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 310 - 345
Target Start/End: Original strand, 33358417 - 33358452
Alignment:
Q  310 gagtttgagtcatgtctttgaatttattgagaaatt 345  Q
    ||||||||||||||||||||||||||||||||||||    
T  33358417 gagtttgagtcatgtctttgaatttattgagaaatt 33358452  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 269
Target Start/End: Original strand, 33358243 - 33358288
Alignment:
Q  225 tcaaggaatattgtgagaaatatg-aagacatgatgattacctcaa 269  Q
    |||||||||||||||||||| ||| ||||||||| |||||||||||    
T  33358243 tcaaggaatattgtgagaaacatgaaagacatgacgattacctcaa 33358288  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 89 - 147
Target Start/End: Complemental strand, 8891247 - 8891189
Alignment:
Q  89 aaccgctcaaatcaaagatgtttcattctcaatttttaacagcaatcattgctttagag 147  Q
    ||||||| |||||| ||||||| |||||||||||||||| ||||| |||||||||||||    
T  8891247 aaccgctgaaatcacagatgttccattctcaatttttaaaagcaaccattgctttagag 8891189  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 89 - 147
Target Start/End: Complemental strand, 8908730 - 8908672
Alignment:
Q  89 aaccgctcaaatcaaagatgtttcattctcaatttttaacagcaatcattgctttagag 147  Q
    ||||||| |||||| ||||||| |||||||||||||||| ||||| |||||||||||||    
T  8908730 aaccgctgaaatcacagatgttccattctcaatttttaaaagcaaccattgctttagag 8908672  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 40883278 - 40883332
Alignment:
Q  93 gctcaaatcaaagatgtttcattctcaatttttaacagcaatcattgctttagag 147  Q
    |||||||||| ||||||| |||||||||||||||| ||||| |||||||||||||    
T  40883278 gctcaaatcacagatgttccattctcaatttttaaaagcaaccattgctttagag 40883332  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 51035026 - 51035070
Alignment:
Q  89 aaccgctcaaatcaaagatgtttcattctcaatttttaacagcaa 133  Q
    |||||||||||||| | |||| ||||||| |||||||||||||||    
T  51035026 aaccgctcaaatcacaaatgtgtcattctaaatttttaacagcaa 51035070  T

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