View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18836_high_13 (Length: 352)
Name: NF18836_high_13
Description: NF18836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18836_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 6 - 327
Target Start/End: Complemental strand, 40854000 - 40853676
Alignment:
| Q |
6 |
tttgcttcttcaatattcaccattttattatagatcacctttccttgctatttgaagtaaatttttgtacgtgtgtgtgaagggattgaaacttgtatgt |
105 |
Q |
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| T |
40854000 |
tttgcttcttcaatattcaccattttattatagatcacctttccttgctatttgaagtaaatttttgtacgtgtgtgtgaagggattgaaacttgtatgt |
40853901 |
T |
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| Q |
106 |
tttattaaacattgtgcactattttgcttatgcaatttcacaagcccatttcttctaatctctatgatgctatcctatgaatcaaaatatgacattgtat |
205 |
Q |
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| T |
40853900 |
tttattaaacattgtgcactattttgcttatgcaatttcacaagcccatttcttctaatctctatgatgctaccctatgaatcaaaatatgacattgtat |
40853801 |
T |
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| Q |
206 |
tctatgtgc---ttatatttaataatttgcattccagatggatacttaagtgtcatgcctgcttcactgttactgctgaaattgagaggattttatctgt |
302 |
Q |
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| T |
40853800 |
tctatgtgcttattatatttattaatttgcattccagatggatacttaagtgtcatgcctgcttcactgttactgctgaaattgagaggattttatctgt |
40853701 |
T |
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| Q |
303 |
ccaaaatgtggaaatggtggcacct |
327 |
Q |
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| T |
40853700 |
ccaaaatgtggaaatggtggcacct |
40853676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 9 - 327
Target Start/End: Complemental strand, 40858402 - 40858091
Alignment:
| Q |
9 |
gcttcttcaatattcaccattttattatagatcacctttccttgctatttgaagtaaatttttgtacgtgtgtgtgaagggattgaaacttgtatgtttt |
108 |
Q |
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| T |
40858402 |
gcttctacaatattcaccatgttattatagatcacctgtccttgctatttggagtaaattttttaa----tgtgtgacgggattgaaacttgtatgtttt |
40858307 |
T |
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| Q |
109 |
attaaacattgtgcactattttgcttatgcaatttcacaagcccatttcttctaatctctatgatgctatcctatgaatcaaaatatgacattgtattct |
208 |
Q |
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| T |
40858306 |
gttaaacattgtgcagtattatgctcatgcaatttcacatgcctatttcttataatctct--gatactatcctacgaagcacaatatgctgttgtatttt |
40858209 |
T |
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| Q |
209 |
atgtgcttatattt-aataatttgcattccagatggatacttaagtgtcatgcctgcttcactgttactgctgaaattgagaggattttatctgtccaaa |
307 |
Q |
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| T |
40858208 |
acgtgcttatcttttaattatttgcattccagatggatactcaagtgtcatgcctgcttcactgttactgctgaaattgggaggattt--tctgtccaaa |
40858111 |
T |
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| Q |
308 |
atgtggaaatggtggcacct |
327 |
Q |
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| T |
40858110 |
atgcggaaatggcggcacct |
40858091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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