View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18836_high_17 (Length: 313)

Name: NF18836_high_17
Description: NF18836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18836_high_17
NF18836_high_17
[»] chr1 (1 HSPs)
chr1 (28-313)||(46573763-46574046)


Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 28 - 313
Target Start/End: Original strand, 46573763 - 46574046
Alignment:
Q  28 ctaaatgattaagctctctcttatgctcaagttttgcctcgaatacaaagataaatctattctctctcatcatcatgcatttttctttttctttctcaaa 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  46573763 ctaaatgattaagctctctcttatgctcaagttttgcctcgaatacaaagataaatctattctctctcatcatcatgcattttt--ttttctttctcaaa 46573860  T
Q  128 gcaactaatgatcacattttatcctaacaaaacgttcaaatgaatgtcatctcaagtatcacttgggtccctagacatatgatatatagagtcatctatt 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46573861 gcaactaatgatcacattttatcctaacaaaacgttcaaatgaatgtcatctcaagtatcacttgggtccctagacatatgatatatagagtcatctatt 46573960  T
Q  228 gttgagtgctaatcaacttatactacaagagtggtagggttgagagtcatcaaagaaagtgacaatccacattctttatcacttgc 313  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  46573961 gttgagtgctaatcaacttatactacacgagtggtagggttgagagtcatcaaagaaagtgacaatccaaattctttatcacttgc 46574046  T

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