View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18836_high_2 (Length: 540)

Name: NF18836_high_2
Description: NF18836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18836_high_2
NF18836_high_2
[»] chr4 (8 HSPs)
chr4 (384-527)||(15559643-15559786)
chr4 (390-527)||(15560149-15560286)
chr4 (167-222)||(15562160-15562215)
chr4 (167-226)||(43365841-43365900)
chr4 (167-226)||(44363351-44363410)
chr4 (192-226)||(12499057-12499091)
chr4 (304-332)||(14015925-14015953)
chr4 (170-226)||(51871618-51871674)
[»] chr1 (3 HSPs)
chr1 (18-148)||(21941220-21941348)
chr1 (167-220)||(26767667-26767720)
chr1 (192-225)||(42508298-42508331)
[»] chr6 (4 HSPs)
chr6 (440-525)||(34988865-34988950)
chr6 (440-513)||(35042427-35042500)
chr6 (191-226)||(10244541-10244576)
chr6 (195-227)||(28587657-28587689)
[»] chr8 (3 HSPs)
chr8 (149-226)||(32089237-32089315)
chr8 (193-231)||(20771462-20771500)
chr8 (193-231)||(20781256-20781294)
[»] chr7 (4 HSPs)
chr7 (192-225)||(44858069-44858102)
chr7 (192-231)||(23416137-23416175)
chr7 (192-226)||(27567859-27567893)
chr7 (149-217)||(45871759-45871828)
[»] chr5 (2 HSPs)
chr5 (193-226)||(3577779-3577812)
chr5 (193-226)||(14626244-14626277)
[»] chr3 (1 HSPs)
chr3 (194-226)||(39450662-39450694)
[»] scaffold0157 (1 HSPs)
scaffold0157 (192-226)||(21386-21420)
[»] chr2 (3 HSPs)
chr2 (194-226)||(964093-964125)
chr2 (194-226)||(40609912-40609944)
chr2 (192-224)||(42006401-42006433)


Alignment Details
Target: chr4 (Bit Score: 124; Significance: 2e-63; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 384 - 527
Target Start/End: Original strand, 15559643 - 15559786
Alignment:
Q  384 acacaagcaacagatttgagcacagaacataacaatcacaaatgctagctgctcgttaggacaggtgccaggctttgcctccattcatattgaatttctt 483  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||| ||||    
T  15559643 acacaagcaacagatttgagcacagaacataacaatcacaaatgctatctgctccttaggacaggtgccaggctttgcctcctttcatattgaatctctt 15559742  T
Q  484 gtgcctcccaaagaacataaccaatataaggatacacttcccct 527  Q
    | ||||||||||||||||||||||||||||||||||||||||||    
T  15559743 gagcctcccaaagaacataaccaatataaggatacacttcccct 15559786  T

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Target: chr4; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 390 - 527
Target Start/End: Complemental strand, 15560286 - 15560149
Alignment:
Q  390 gcaacagatttgagcacagaacataacaatcacaaatgctagctgctcgttaggacaggtgccaggctttgcctccattcatattgaatttcttgtgcct 489  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||    
T  15560286 gcaacagctttgagcacagaacataacaatcacaaatgctagctgctcgttaggacaggtgccaggctttgcctcctttcatattgaatctcttgagcct 15560187  T
Q  490 cccaaagaacataaccaatataaggatacacttcccct 527  Q
     |||||||||||||||||||||||||||||||||||||    
T  15560186 accaaagaacataaccaatataaggatacacttcccct 15560149  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 15562215 - 15562160
Alignment:
Q  167 tttagacaaattattatatagaaaaaccaaaactgtcaaattttaaaataggggga 222  Q
    |||||||||||||||| |||||   |||||||||||||||||||||||||||||||    
T  15562215 tttagacaaattattagatagagggaccaaaactgtcaaattttaaaataggggga 15562160  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 43365900 - 43365841
Alignment:
Q  167 tttagacaaattattatatagaaaaaccaaaactgtcaaattttaaaatagggggaccaa 226  Q
    |||||||||| ||||| |||||  ||||||||||||| |||||||||||| | |||||||    
T  43365900 tttagacaaaatattagatagaggaaccaaaactgtcgaattttaaaatatgaggaccaa 43365841  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 44363351 - 44363410
Alignment:
Q  167 tttagacaaattattatatagaaaaaccaaaactgtcaaattttaaaatagggggaccaa 226  Q
    |||||||||| |||| ||||||   ||||||| |||| ||||||||||||||||||||||    
T  44363351 tttagacaaaatattttatagagggaccaaaattgtcgaattttaaaatagggggaccaa 44363410  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 192 - 226
Target Start/End: Complemental strand, 12499091 - 12499057
Alignment:
Q  192 accaaaactgtcaaattttaaaatagggggaccaa 226  Q
    |||||||||||| ||||||||||||||||||||||    
T  12499091 accaaaactgtcgaattttaaaatagggggaccaa 12499057  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 304 - 332
Target Start/End: Complemental strand, 14015953 - 14015925
Alignment:
Q  304 atgttcagcaagtagcttcaattctcttg 332  Q
    |||||||||||||||||||||||||||||    
T  14015953 atgttcagcaagtagcttcaattctcttg 14015925  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 51871674 - 51871618
Alignment:
Q  170 agacaaattattatatagaaaaaccaaaactgtcaaattttaaaatagggggaccaa 226  Q
    ||||||||||||| ||||| | || ||| |||||||||||||||||| || ||||||    
T  51871674 agacaaattattagatagagagactaaagctgtcaaattttaaaatacggagaccaa 51871618  T

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Target: chr1 (Bit Score: 108; Significance: 5e-54; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 21941220 - 21941348
Alignment:
Q  18 aaacagggtagcaggtgtggtttcttgtccacaatcaaagctgatgagcgaatatttctttgtttctttgctgttatccaaacaggttttatttacttct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||| || ||||||||||    
T  21941220 aaacagggtagcaggtgtggtttcttgtccacaatcaaagctgatgagcgaatatttc--tgtttctttgctgtcatccaaacagggttcatttacttct 21941317  T
Q  118 ctttccttccaccttctttttcacactattc 148  Q
    |||||||||||||||||||||||||||||||    
T  21941318 ctttccttccaccttctttttcacactattc 21941348  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 26767720 - 26767667
Alignment:
Q  167 tttagacaaattattatatagaaaaaccaaaactgtcaaattttaaaatagggg 220  Q
    |||||||||| ||| |||||||   |||||||||||||||||||||||||||||    
T  26767720 tttagacaaaatataatatagagggaccaaaactgtcaaattttaaaatagggg 26767667  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 42508331 - 42508298
Alignment:
Q  192 accaaaactgtcaaattttaaaatagggggacca 225  Q
    |||||||||||| |||||||||||||||||||||    
T  42508331 accaaaactgtcgaattttaaaatagggggacca 42508298  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 440 - 525
Target Start/End: Original strand, 34988865 - 34988950
Alignment:
Q  440 taggacaggtgccaggctttgcctccattcatattgaatttcttgtgcctcccaaagaacataaccaatataaggatacacttccc 525  Q
    ||||||| || ||| |||||||| ||||||||||||||||||||| || ||||||||||||| ||||| ||||||||| |||||||    
T  34988865 taggacaagttccatgctttgccaccattcatattgaatttcttgagcatcccaaagaacattaccaaaataaggataaacttccc 34988950  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 440 - 513
Target Start/End: Original strand, 35042427 - 35042500
Alignment:
Q  440 taggacaggtgccaggctttgcctccattcatattgaatttcttgtgcctcccaaagaacataaccaatataag 513  Q
    |||||||||||||| || ||||| ||||||||||||||||||||| | |||||||||||||| ||||| |||||    
T  35042427 taggacaggtgccatgccttgccaccattcatattgaatttcttgagtctcccaaagaacattaccaagataag 35042500  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 191 - 226
Target Start/End: Original strand, 10244541 - 10244576
Alignment:
Q  191 aaccaaaactgtcaaattttaaaatagggggaccaa 226  Q
    ||||||||||||||||||||||||||||||||||||    
T  10244541 aaccaaaactgtcaaattttaaaatagggggaccaa 10244576  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 28587689 - 28587657
Alignment:
Q  195 aaaactgtcaaattttaaaatagggggaccaaa 227  Q
    ||||||||| |||||||||||||||||||||||    
T  28587689 aaaactgtcgaattttaaaatagggggaccaaa 28587657  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 149 - 226
Target Start/End: Original strand, 32089237 - 32089315
Alignment:
Q  149 acatgttatatcaccttcttta-gacaaattattatatagaaaaaccaaaactgtcaaattttaaaatagggggaccaa 226  Q
    ||||||||||||||| | |||| |||||||||||| ||||| | |||||||||||| || || ||||||||||||||||    
T  32089237 acatgttatatcaccatatttaagacaaattattagatagagagaccaaaactgtcgaacttcaaaatagggggaccaa 32089315  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 193 - 231
Target Start/End: Complemental strand, 20771500 - 20771462
Alignment:
Q  193 ccaaaactgtcaaattttaaaatagggggaccaaaactg 231  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  20771500 ccaaaattgtcaacttttaaaatagggggaccaaaactg 20771462  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 193 - 231
Target Start/End: Complemental strand, 20781294 - 20781256
Alignment:
Q  193 ccaaaactgtcaaattttaaaatagggggaccaaaactg 231  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  20781294 ccaaaattgtcaacttttaaaatagggggaccaaaactg 20781256  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 44858069 - 44858102
Alignment:
Q  192 accaaaactgtcaaattttaaaatagggggacca 225  Q
    ||||||||||||||||||||||||||||||||||    
T  44858069 accaaaactgtcaaattttaaaatagggggacca 44858102  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 231
Target Start/End: Original strand, 23416137 - 23416175
Alignment:
Q  192 accaaaactgtcaaattttaaaatagggggaccaaaactg 231  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  23416137 accaaaactgtcaaattttaaaata-ggggaccaaaactg 23416175  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 192 - 226
Target Start/End: Original strand, 27567859 - 27567893
Alignment:
Q  192 accaaaactgtcaaattttaaaatagggggaccaa 226  Q
    |||||||||||| ||||||||||||||||||||||    
T  27567859 accaaaactgtcgaattttaaaatagggggaccaa 27567893  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 217
Target Start/End: Complemental strand, 45871828 - 45871759
Alignment:
Q  149 acatgttatatcaccttcttt-agacaaattattatatagaaaaaccaaaactgtcaaattttaaaatag 217  Q
    ||||||||||||||| | ||| ||||||| |||||||||||   |||||||||||  |||||||||||||    
T  45871828 acatgttatatcaccatattttagacaaaatattatatagagggaccaaaactgttgaattttaaaatag 45871759  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 3577779 - 3577812
Alignment:
Q  193 ccaaaactgtcaaattttaaaatagggggaccaa 226  Q
    ||||||||||||||||||||||||||||||||||    
T  3577779 ccaaaactgtcaaattttaaaatagggggaccaa 3577812  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 14626277 - 14626244
Alignment:
Q  193 ccaaaactgtcaaattttaaaatagggggaccaa 226  Q
    |||||||||||||||||||||||||| |||||||    
T  14626277 ccaaaactgtcaaattttaaaataggaggaccaa 14626244  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 39450694 - 39450662
Alignment:
Q  194 caaaactgtcaaattttaaaatagggggaccaa 226  Q
    |||||||||||||||||||||||||||||||||    
T  39450694 caaaactgtcaaattttaaaatagggggaccaa 39450662  T

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Target: scaffold0157 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 192 - 226
Target Start/End: Original strand, 21386 - 21420
Alignment:
Q  192 accaaaactgtcaaattttaaaatagggggaccaa 226  Q
    |||||||||||| ||||||||||||||||||||||    
T  21386 accaaaactgtcgaattttaaaatagggggaccaa 21420  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 964093 - 964125
Alignment:
Q  194 caaaactgtcaaattttaaaatagggggaccaa 226  Q
    |||||||||| ||||||||||||||||||||||    
T  964093 caaaactgtcgaattttaaaatagggggaccaa 964125  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 40609912 - 40609944
Alignment:
Q  194 caaaactgtcaaattttaaaatagggggaccaa 226  Q
    ||||||| |||||||||||||||||||||||||    
T  40609912 caaaactctcaaattttaaaatagggggaccaa 40609944  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 42006433 - 42006401
Alignment:
Q  192 accaaaactgtcaaattttaaaatagggggacc 224  Q
    ||||||||||||||||||||||||||| |||||    
T  42006433 accaaaactgtcaaattttaaaataggaggacc 42006401  T

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