View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18836_high_20 (Length: 287)
Name: NF18836_high_20
Description: NF18836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18836_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 31348593 - 31348326
Alignment:
| Q |
1 |
tagaagaagacttgatatatcatgacaaattaataaattattggagaaacaaagaaaatggaggatgtccaatgagaaactgtgagtcattttcaaaata |
100 |
Q |
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| T |
31348593 |
tagaagaagacttgatatatcatgacaaattaataaattattggagaaacaaagaaaatggaggatgtcaaatgagaaactgtgagtcattttcaaaata |
31348494 |
T |
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| Q |
101 |
atggaatcattttagatttattgaaaaaacccaagaccaattacatgatgtaaaaacacaatgaaatgatcaaaacacagtgttgcacgttagagaatta |
200 |
Q |
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| T |
31348493 |
atggaatcattttagatttattgaaaaaacccaagaccaattacatgatgtaaaaacacaatgaaatgatcaaaacacagtgttgcacgttagagaatta |
31348394 |
T |
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| Q |
201 |
agttcggacgatgattctttgtttatggacgctaaggactggagctaagctctcatacaagcgctagg |
268 |
Q |
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| T |
31348393 |
agttcggacgatgattctctgtttatggacgctaaggactggagctaagctctcatacaagcgctagg |
31348326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 13311002 - 13311048
Alignment:
| Q |
133 |
aagaccaattacatgatgtaaaaacacaatgaaatgatcaaaacaca |
179 |
Q |
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| T |
13311002 |
aagaccaattacatgattcaaaaacacaagaaaatgatcaaaacaca |
13311048 |
T |
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