View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18836_high_30 (Length: 225)
Name: NF18836_high_30
Description: NF18836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18836_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 128 - 207
Target Start/End: Original strand, 38998601 - 38998680
Alignment:
| Q |
128 |
aagttggtgtatcgggacaaagagtaacaaacttggttgaatcacatcctagatgattctttttctcaaacgagtctgca |
207 |
Q |
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| T |
38998601 |
aagttggtgtatcgggacaaagagtaacaaacttggttgaatcacatcctagatgattctttttctcaaacgagtctgca |
38998680 |
T |
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Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 38998474 - 38998535
Alignment:
| Q |
1 |
cctaatggagaattaaaaacttgtccaaactttgttacttctatgctcctttccttcttgca |
62 |
Q |
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| T |
38998474 |
cctaatggagaattaaaaacttgtccaaactttgttacttctatgctcctttccttcttgca |
38998535 |
T |
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