View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18836_high_7 (Length: 417)
Name: NF18836_high_7
Description: NF18836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18836_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 29 - 406
Target Start/End: Complemental strand, 35364561 - 35364184
Alignment:
| Q |
29 |
atagatcaaagatatatggttggttatttaaagagaagtagtcatgtgcaatagataggtgctttgtggtcccaaaatcaacaagttgtggaatccatgt |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35364561 |
atagatcaaagatatatggttggttatttaaagagaagtagtcatgtgcaatagatagatgctttgtggtcccaaaatcaacaagttgtggaatccatgt |
35364462 |
T |
|
| Q |
129 |
catactactcttgttgacttaaaacaggaatgtgatattcatcgcaagctatagctgttttaaatcccaaccattaattttaaattagacggttcatttt |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35364461 |
catactactcttgttgacttaaaacaggaatgtgatattcattgcaagctatagctgttttaaatcccaaccattaattttaaattagacggttcatttt |
35364362 |
T |
|
| Q |
229 |
agacactaaactaaaacattttaaaacttgtcaaattaactctaaaatgactccttattagtgctaaaaatactatacaagggaccgtcatcagccgaga |
328 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35364361 |
agacactaaactaaaacattttaaaacttatcaaattaactctaaaatgactccttgttagtgctaaaaatactatacaagggaccgtcatcagccgaga |
35364262 |
T |
|
| Q |
329 |
atcttgtacaccatttttaagcttttccttcaaagcaagcaaaggggataaaaatgtaattaacacttaatcattcat |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35364261 |
atcttgtacaccatttttaagcttttccttcaaagcaagcaaaggggataaaaatgtaattaacacttaatcattcat |
35364184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 372
Target Start/End: Complemental strand, 35404473 - 35404427
Alignment:
| Q |
326 |
agaatcttgtacaccatttttaagcttttccttcaaagcaagcaaag |
372 |
Q |
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| T |
35404473 |
agaatctggtacaccatttgtaagcttttccttcaatgcaagcaaag |
35404427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 372
Target Start/End: Complemental strand, 35752709 - 35752663
Alignment:
| Q |
326 |
agaatcttgtacaccatttttaagcttttccttcaaagcaagcaaag |
372 |
Q |
| |
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||||||| ||||||||||| ||||||||||||| ||||||||||||| |
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| T |
35752709 |
agaatctggtacaccatttgtaagcttttcctttaaagcaagcaaag |
35752663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 372
Target Start/End: Complemental strand, 35364742 - 35364706
Alignment:
| Q |
336 |
acaccatttttaagcttttccttcaaagcaagcaaag |
372 |
Q |
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| T |
35364742 |
acaccatttgtaagcttttctttcaaagcaagcaaag |
35364706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 237 - 402
Target Start/End: Original strand, 10422306 - 10422471
Alignment:
| Q |
237 |
aactaaaacattttaaaacttgtcaaattaactctaaaatgactccttattagtgctaaaaatactatacaagggaccgtcatcagccgagaatcttgta |
336 |
Q |
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|
||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
10422306 |
aactaaaacattttaaaacttgtcaaattgcctctaaaatgactccttatcaatgctaaaaatactatacaatggaccgtcatcagccgagaatcttgta |
10422405 |
T |
|
| Q |
337 |
caccatttttaagcttttccttcaaagcaagcaaaggggataaaaatgtaattaacacttaatcat |
402 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
10422406 |
caccatttttaagcttttccttcaaagcaagcaaaggagataaaaatgtaattaacacttaatcat |
10422471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 10422133 - 10422190
Alignment:
| Q |
182 |
gctgttttaaatcccaaccattaattttaaattagacggttcattttagacactaaac |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
10422133 |
gctgttttaaatcccaaccattaattttaaattagacggttcatattagacactaaac |
10422190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 326 - 372
Target Start/End: Original strand, 10412265 - 10412311
Alignment:
| Q |
326 |
agaatcttgtacaccatttttaagcttttccttcaaagcaagcaaag |
372 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
10412265 |
agaatcttgtacaccatttgtaagcttttccttcaaagcaagcaaag |
10412311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 326 - 372
Target Start/End: Original strand, 10417988 - 10418034
Alignment:
| Q |
326 |
agaatcttgtacaccatttttaagcttttccttcaaagcaagcaaag |
372 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
10417988 |
agaatctggtacaccatttgtaagcttttccttcaaagcaagcaaag |
10418034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 372
Target Start/End: Complemental strand, 30669586 - 30669548
Alignment:
| Q |
334 |
gtacaccatttttaagcttttccttcaaagcaagcaaag |
372 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
30669586 |
gtacaccatttgtaagcttttccttcaaagcaagcaaag |
30669548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 372
Target Start/End: Complemental strand, 30633176 - 30633139
Alignment:
| Q |
335 |
tacaccatttttaagcttttccttcaaagcaagcaaag |
372 |
Q |
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|||||||||| ||||||||||||||||||||||||||| |
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| T |
30633176 |
tacaccatttgtaagcttttccttcaaagcaagcaaag |
30633139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 372
Target Start/End: Complemental strand, 30660905 - 30660868
Alignment:
| Q |
335 |
tacaccatttttaagcttttccttcaaagcaagcaaag |
372 |
Q |
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|||||||||| ||||||||||||||||||||||||||| |
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|
| T |
30660905 |
tacaccatttgtaagcttttccttcaaagcaagcaaag |
30660868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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