View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18836_low_1 (Length: 676)
Name: NF18836_low_1
Description: NF18836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18836_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 551; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 1 - 659
Target Start/End: Complemental strand, 4145784 - 4145122
Alignment:
| Q |
1 |
atgtttagaatcaagaagagttttaacttggatctcataatgaggaattttatagcggaacgaatgtttaagtgttgttgtgggaatgaattatggttct |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4145784 |
atgtttagaatcaagaagagttttaacttggatctcataatgaggaattttatagcggaacgaatgtttaagtgttgttgtgggaatgaattatggttct |
4145685 |
T |
|
| Q |
101 |
ataggaatgattatgagaaaacaattttgaaccattaagaatctnnnnnnnnnnnnncagtgtgcatgattcaaaatacattagtaggttgattcgaatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4145684 |
ataggaatgattatgagaaaacaattttgaaccattaagaatctaaaaaaaaaaaaacagtgtgcatgattcaaaatacattagtaggttgattcgaatc |
4145585 |
T |
|
| Q |
201 |
cnnnnnnnnactaaattgtttcgaaccacaactccctacatcgacattcaagattcaagattacttaggtattcgaatcaattaggtaagttgatttgaa |
300 |
Q |
| |
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| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4145584 |
cttttttttactaaattgtttcgaaccacaactccctaaatcgacattcaagattcaagattacttaggtattcgaatcaattaggtaagttgatttgaa |
4145485 |
T |
|
| Q |
301 |
tcacaactttctagctgaaatcatggaacaaaaatcttaggtgattca----aatcacctttaagcaagatttgaatcaacattttttaccaagttgatt |
396 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4145484 |
tcacaactttctagctgaaatcatggaacaaaaatcttaggtgattcattcaaatcacctttaagcatgatttgaatcaacattttttaccaagttgatt |
4145385 |
T |
|
| Q |
397 |
tttgagtcaccttattaggatgattatgaatcacacagtttaaaaaacttgtaatttgaaacatgcagccatgattcgaataacattataccatgattcg |
496 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4145384 |
tttgaatcaccttattaggatgattatgaatcacacagtttaaaaaacttgtaatttgaaacatgcagccatgattcgaataacattataccatgattcg |
4145285 |
T |
|
| Q |
497 |
agtcagatcatcaaaactaaggattttaataaatttgcatgaatttaaaaaacatgcatgtttaagaatttattttctatgatccctacgttattgagga |
596 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4145284 |
agtcaaatcatcaaaactaaggattttaataaatttgcatgaatttcaaaaacatgcatgtttaagaatttattttctatgatccctacgttattgagga |
4145185 |
T |
|
| Q |
597 |
ttattgaaggttgggaagctctcaaatcggagcacgatttttgggaccacaattgacactttc |
659 |
Q |
| |
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|||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
4145184 |
ttattgaaggttgggaagctgtgaaatcggagcatgatttttgggaccacaattgacactttc |
4145122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 599 - 658
Target Start/End: Complemental strand, 11962934 - 11962875
Alignment:
| Q |
599 |
attgaaggttgggaagctctcaaatcggagcacgatttttgggaccacaattgacacttt |
658 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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|
| T |
11962934 |
attgaaggttgggaagctctcaaatcggagcacaatttttgggaccagaattgacacttt |
11962875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 599 - 636
Target Start/End: Original strand, 20718221 - 20718258
Alignment:
| Q |
599 |
attgaaggttgggaagctctcaaatcggagcacgattt |
636 |
Q |
| |
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|||||||||||||||||| |||||||||||| |||||| |
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| T |
20718221 |
attgaaggttgggaagctgtcaaatcggagcccgattt |
20718258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 620 - 659
Target Start/End: Complemental strand, 26268725 - 26268686
Alignment:
| Q |
620 |
aaatcggagcacgatttttgggaccacaattgacactttc |
659 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
26268725 |
aaatcggagcacgatttttgggaccagaattgacactttc |
26268686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 599 - 636
Target Start/End: Complemental strand, 17799963 - 17799926
Alignment:
| Q |
599 |
attgaaggttgggaagctctcaaatcggagcacgattt |
636 |
Q |
| |
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|||||||||||||||||| |||||||||||| |||||| |
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| T |
17799963 |
attgaaggttgggaagctgtcaaatcggagcccgattt |
17799926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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