View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18836_low_12 (Length: 375)
Name: NF18836_low_12
Description: NF18836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18836_low_12 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 375
Target Start/End: Complemental strand, 39612278 - 39611922
Alignment:
| Q |
19 |
gatggtctactacttatatcatcccaccaagcactaacatttttcctctccttaatcaaataatctttccccatattgttaacaatataatcagtaaatg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39612278 |
gatggtctactacttatatcatcccaccaagcactaacatttttcctctccttaatcaaataatctttccccatattgttaacaatataatcagtaaatg |
39612179 |
T |
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| Q |
119 |
gaaggtgacttatatcagcaaggctgaaaaaatcaccagccaaatacttgctctttgaaagcctctcttcataaatgttcaacaccttcaccaactttgc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
39612178 |
gaaggtgacttatatcagcaaggctgaaaaaatcaccagccaaatacttgttctttgatagtctctcttcataaatgttcaacaccttcaccaactttgc |
39612079 |
T |
|
| Q |
219 |
ttcactctcttcaattacctttggatctggagtgccgtcaactagtagtgaaggaaacaaaacatgaatgaccaagttgtaagctggtgggttaaagttg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39612078 |
ttcactctcttcaattacctttggatctggagtgccgtcaaccagtagtgaaggaaacaaaacatgaatgaccaagttgtaagctggtgggttaaagttg |
39611979 |
T |
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| Q |
319 |
tgtgcttcaacttctaaccattgttccacaagacccttttcttctattgtctttcct |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39611978 |
tgtgcttcaacttctaaccattgttccacaagacccttttcttctattgtctttcct |
39611922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 375
Target Start/End: Complemental strand, 39601457 - 39601101
Alignment:
| Q |
19 |
gatggtctactacttatatcatcccaccaagcactaacatttttcctctccttaatcaaataatctttccccatattgttaacaatataatcagtaaatg |
118 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||| | ||||| ||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
39601457 |
gatggtctactacttatatcattccaccaagcactaacatgcttcttatcctttatcaaataatctttccccatattgttaacaacgtaatccataaatg |
39601358 |
T |
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| Q |
119 |
gaaggtgacttatatcagcaaggctgaaaaaatcaccagccaaatacttgctctttgaaagcctctcttcataaatgttcaacaccttcaccaactttgc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
39601357 |
gaaggtgacttatatcagcaaggctgaaaaaatcaccagccaaatacttgttctttgatagcctctcttcataaatgttgaacaccttcaccaactttgc |
39601258 |
T |
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| Q |
219 |
ttcactctcttcaattacctttggatctggagtgccgtcaactagtagtgaaggaaacaaaacatgaatgaccaagttgtaagctggtgggttaaagttg |
318 |
Q |
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|||||| ||||||||||||||||||||||||| || | || ||||||||| |||| ||||||||||| | ||| ||||| |||| ||||| || || |
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| T |
39601257 |
ttcactttcttcaattacctttggatctggagagctgccacctagtagtgtaggacacaaaacatgacaggtcaaattgtatgctgatgggtggaaatta |
39601158 |
T |
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| Q |
319 |
tgtgcttcaacttctaaccattgttccacaagacccttttcttctattgtctttcct |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39601157 |
tgtgcttcaacttctaaccattgttccacaagacccttttcttctattgtctttcct |
39601101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 33 - 167
Target Start/End: Complemental strand, 34774543 - 34774409
Alignment:
| Q |
33 |
tatatcatcccaccaagcactaacatttttcctctccttaatcaaataatctttccccatattgttaacaatataatcagtaaatggaaggtgacttata |
132 |
Q |
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|||||||| |||||| |||||||||| ||||| ||||| |||||| |||| |||| |||||||||||||| ||||| |||||||||||||||| ||| |
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| T |
34774543 |
tatatcattccaccatgcactaacatgcttcctatcctttatcaaacaatccttcctcatattgttaacaacgtaatccataaatggaaggtgactcata |
34774444 |
T |
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| Q |
133 |
tcagcaaggctgaaaaaatcaccagccaaatactt |
167 |
Q |
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| T |
34774443 |
tcagcaaggctgaaaaaatcaccagccaaatactt |
34774409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 204 - 285
Target Start/End: Complemental strand, 34774411 - 34774330
Alignment:
| Q |
204 |
cttcaccaactttgcttcactctcttcaattacctttggatctggagtgccgtcaactagtagtgaaggaaacaaaacatga |
285 |
Q |
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|||||||||||||||||||||||||||||||||||| || |||||| ||||| || |||||||||||||| |||||||||| |
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| T |
34774411 |
cttcaccaactttgcttcactctcttcaattaccttaggctctggattgccgccagctagtagtgaaggacgcaaaacatga |
34774330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 303 - 374
Target Start/End: Complemental strand, 17647195 - 17647124
Alignment:
| Q |
303 |
tggtgggttaaagttgtgtgcttcaacttctaaccattgttccacaagacccttttcttctattgtctttcc |
374 |
Q |
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||||||||| ||||| |||||||||||||||| |||||| |||||||||||| ||||||||||||||||||| |
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| T |
17647195 |
tggtgggttgaagttatgtgcttcaacttctagccattgctccacaagacccctttcttctattgtctttcc |
17647124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 229
Target Start/End: Complemental strand, 17647362 - 17647266
Alignment:
| Q |
133 |
tcagcaaggctgaaaaaatcaccagccaaatacttgctctttgaaagcctctcttcataaatgttcaacaccttcaccaactttgcttcactctctt |
229 |
Q |
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||||||||||| || |||||||||||||| ||||| ||||||| ||||||||||||||||| | ||||||||| | | |||| |||||||||||| |
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| T |
17647362 |
tcagcaaggctaaagaaatcaccagccaagtacttagtctttgatagcctctcttcataaatatccaacacctttccaagcttttcttcactctctt |
17647266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 132 - 233
Target Start/End: Original strand, 17572784 - 17572885
Alignment:
| Q |
132 |
atcagcaaggctgaaaaaatcaccagccaaatacttgctctttgaaagcctctcttcataaatgttcaacaccttcaccaactttgcttcactctcttca |
231 |
Q |
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||||||||| || || |||||||||||||| |||||| ||||||| |||||||| |||||||| | |||||| ||| || |||| | |||||||||||| |
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| T |
17572784 |
atcagcaagactaaagaaatcaccagccaagtacttggtctttgagagcctctcctcataaatatccaacactttcttcagcttttcatcactctcttca |
17572883 |
T |
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| Q |
232 |
at |
233 |
Q |
| |
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|| |
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| T |
17572884 |
at |
17572885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 273 - 375
Target Start/End: Original strand, 17572922 - 17573024
Alignment:
| Q |
273 |
aaacaaaacatgaatgaccaagttgtaagctggtgggttaaagttgtgtgcttcaacttctaaccattgttccacaagacccttttcttctattgtcttt |
372 |
Q |
| |
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||||| ||||| ||||||||| |||| || ||||| |||||| |||||||| ||||| | ||||||||||||||||||| ||||||||| |||||| |
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| T |
17572922 |
aaacagaacattgatgaccaagctgtagattgctgggtgaaagttatgtgcttccacttcaagccattgttccacaagacccctttcttctaccgtcttt |
17573021 |
T |
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| Q |
373 |
cct |
375 |
Q |
| |
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||| |
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| T |
17573022 |
cct |
17573024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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