View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18836_low_16 (Length: 350)
Name: NF18836_low_16
Description: NF18836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18836_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 27 - 334
Target Start/End: Complemental strand, 38875666 - 38875360
Alignment:
| Q |
27 |
actgatacttaacaaaacatggagaaaatattttcgcagagnnnnnnnnnnnnnnnnnncataggactattgcttgttgtgaatnnnnnnnnnntcatga |
126 |
Q |
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| T |
38875666 |
actgatacttaacaaaacatggagaaaatattttcgcagagaaaataaaaaataaaaaacatgggactattgcttgttgtgaataaaaaaaaa-tcatga |
38875568 |
T |
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| Q |
127 |
tcatagtttaagaatgataagtaaatattatatagtttaataatgatatactatgtagcaccaattcttcacattgaagttgtgtccgacatgtgttggt |
226 |
Q |
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| T |
38875567 |
tcatagtttaagaatgataagtaaatattatatagtttaataatgatatactatgtagcatcaattcttcacattgaagttgtgtccgacatgtgttggt |
38875468 |
T |
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| Q |
227 |
gacatacatcgtcaagacaccgacacatttgattacattcctattttgctagattttacatccctatgaacaatagaaacaacactatcataatgcaaat |
326 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38875467 |
gacatatatcgtcaagacaccgacacatttgattacattcctattttgctagattttacatccctatgaacaataagaacaacactatcataatgcaaat |
38875368 |
T |
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| Q |
327 |
aagaaagt |
334 |
Q |
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| T |
38875367 |
aagaaagt |
38875360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 121 - 295
Target Start/End: Complemental strand, 38872417 - 38872248
Alignment:
| Q |
121 |
tcatgatcatagtttaagaatgataagtaaatattatatagtttaataatgatatactatgtagcaccaattcttcacattgaagttgtgtccgacatgt |
220 |
Q |
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| T |
38872417 |
tcatgatcatagtttaaga----taagtaaatattatatagtttaataatgatatactatgttgcatcatttcttcacattgatgttgtgtccgacatgt |
38872322 |
T |
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| Q |
221 |
gttggtgacatacatcgtcaagacaccgacacatttgattacattcctattttgctagattttacatccctatga |
295 |
Q |
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| T |
38872321 |
gttggtgacatacatcatcaagaca-cgacatatttgattacatctctattttgctagattctacatccctatga |
38872248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 275 - 334
Target Start/End: Complemental strand, 38868345 - 38868286
Alignment:
| Q |
275 |
ctagattttacatccctatgaacaatagaaacaacactatcataatgcaaataagaaagt |
334 |
Q |
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| T |
38868345 |
ctagattttacatccctatgaacaataggaacaacacaatcatggtgcaaataagaaagt |
38868286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 180
Target Start/End: Complemental strand, 38869219 - 38869168
Alignment:
| Q |
129 |
atagtttaagaatgataagtaaatattatatagtttaataatgatatactat |
180 |
Q |
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| T |
38869219 |
atagtttaagaatgttaagtaaatataatatagtttaatgatgatagactat |
38869168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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