View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18836_low_17 (Length: 336)
Name: NF18836_low_17
Description: NF18836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18836_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 31333369 - 31333666
Alignment:
| Q |
18 |
agatttacttctatgagaaattacttttgttttctttctgaacgtaattgtatatatgctcatcatgttacgtgcgcatgacaaatgaataagttattaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
31333369 |
agatttacttctatgagaaattacttttgttttctttctgaacgtaattgtatatatgctcatcatgttatgtgagcatgacaaatgaataagttattaa |
31333468 |
T |
|
| Q |
118 |
gctattgattgtggagtgcgttgcattgcttgtcgtcgctttgccatgacttatattacttgaacaaattcttgtgtcctccttattgaagttctctttg |
217 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
31333469 |
gctattgattgtggagtgcattgcattgcttgtcgtcgctttgccatgacttatattacttgaacaaattcttatgtcctacttattgaagttctctttg |
31333568 |
T |
|
| Q |
218 |
gtagcatgggttttgcatatttgttgcatacttttctttgtagttacttttctgaatatataaaatcaataaaatctctgtaaaccatctttatttat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31333569 |
gtagcatgggttttgcatatttgttgcatacttttctttgtagttacttttctgaatatataaaatcaataaaatctctgtaaaacatctttatttat |
31333666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 31340099 - 31340396
Alignment:
| Q |
18 |
agatttacttctatgagaaattacttttgttttctttctgaacgtaattgtatatatgctcatcatgttacgtgcgcatgacaaatgaataagttattaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
31340099 |
agatttacttctatgagaaattacttttgttttctttctgaacgtaattgtatatatgctcatcatgttatgtgtgcatgacaaatgaataagttattaa |
31340198 |
T |
|
| Q |
118 |
gctattgattgtggagtgcgttgcattgcttgtcgtcgctttgccatgacttatattacttgaacaaattcttgtgtcctccttattgaagttctctttg |
217 |
Q |
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| T |
31340199 |
gctattgattgtggagtgcattgcattgcttgtcgtcgctttgccatgacttatattacttgaacaaattcttatgtcctacttattgaagttctctttg |
31340298 |
T |
|
| Q |
218 |
gtagcatgggttttgcatatttgttgcatacttttctttgtagttacttttctgaatatataaaatcaataaaatctctgtaaaccatctttatttat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31340299 |
gtagcatgggttttgcatatttgttgcatacttttctttgtagttacttttctgaatatataaaatcaataaaatctctgtaaaacatctttatttat |
31340396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 45245523 - 45245572
Alignment:
| Q |
247 |
acttttctttgtagttacttttctgaatatataaaatcaataaaatctct |
296 |
Q |
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|||||||| || ||||||||||||||||||||||||||||| ||||||| |
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| T |
45245523 |
acttttctctgctgttacttttctgaatatataaaatcaatagaatctct |
45245572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 644603 - 644374
Alignment:
| Q |
18 |
agatttacttctatgagaaattacttttgttttctttctgaacgtaattgtatatatgctcatcatgttacgtgcgcatgacaaatgaataagttattaa |
117 |
Q |
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||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
644603 |
agatttacttctatgagaaattacttttgttctcttttttaacgtaattgtatatatgctcatcatgttatgtgtgcatgacaaatgaataagttattaa |
644504 |
T |
|
| Q |
118 |
------------gctattgattgtggagtgcgttgcattgcttgtcgtcgctttgccatgacttatattacttgaacaaattcttgtgtcctccttattg |
205 |
Q |
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||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
644503 |
tatataatgcaagctattgattgtggagtgcattgcattgcttgttgtcgctttgccatgacttatattacttgaacaaattcttgtttcctacttattt |
644404 |
T |
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| Q |
206 |
aagttctctttggtagcatgggttttgcat |
235 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
644403 |
aagttctctttggtagcatgggttttgcat |
644374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 226 - 315
Target Start/End: Complemental strand, 644356 - 644267
Alignment:
| Q |
226 |
ggttttgcatatttgttgcatacttttctttgtagttacttttctgaatatataaaatcaataaaatctctgtaaaccatctttatttat |
315 |
Q |
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|||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
644356 |
ggttttgcatatttgtagcatacttttccttatagttacttttctgaatatataaaatcaataaaatctctgtaaaaaatctttatttat |
644267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 1657011 - 1656879
Alignment:
| Q |
18 |
agatttacttctatgagaaattacttttgttttctttctgaacgtaattgtatatatgctcatcatgttacgtgcgcatgacaaatgaataagttattaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1657011 |
agatttacttctatgagaaattacttttgttttctttctgaacgtaattgtatatatgctcatcatgttatgtgcgcatgacaaatgaataagttattaa |
1656912 |
T |
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| Q |
118 |
gctattgattgtggagtgcgttgcattgcttgt |
150 |
Q |
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||||||||||||||||||| ||||||||||||| |
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| T |
1656911 |
gctattgattgtggagtgcattgcattgcttgt |
1656879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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