View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18836_low_21 (Length: 305)
Name: NF18836_low_21
Description: NF18836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18836_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 30 - 287
Target Start/End: Complemental strand, 887467 - 887216
Alignment:
| Q |
30 |
ttcgattagcaagcatatatttcctttactctgaaaattaaggatatatagctagcatgttagaatataattacttaattagaggatcataaaatcaaag |
129 |
Q |
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| T |
887467 |
ttcgaatagcaagcatatatttccttttctctgaaaattaaggatatatagctagcatgttagtatataattacttaattagaggatcataaaatcaaag |
887368 |
T |
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| Q |
130 |
gtagcttaataaaaaggtgctcaccgacagttttatataatgtttaactagtaattcaaacttcacattgtttttgttgtttgtgatgctcaatattata |
229 |
Q |
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| T |
887367 |
gtagcttcacaaaaaggtgctcaccgagagggttatataatgttcaacttgtaattcaaacttcacat------tgttgtttgtgatgctcaatattata |
887274 |
T |
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| Q |
230 |
ggcttcaaataatctttgctcacttggtctatagactgaaatatcttacccgtccaac |
287 |
Q |
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| T |
887273 |
ggcttcaaataatctttgctcacttggtctatagactgaaatatcttacccgtccaac |
887216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 31880610 - 31880668
Alignment:
| Q |
94 |
atataattacttaattagaggatcataaaatcaaaggtagcttaataaaaaggtgctca |
152 |
Q |
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| T |
31880610 |
atataattatttaattagaggatcataaaatcaaaggtagcttaataaaaaggtgctca |
31880668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 265
Target Start/End: Original strand, 31875053 - 31875100
Alignment:
| Q |
218 |
ctcaatattataggcttcaaataatctttgctcacttggtctatagac |
265 |
Q |
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| T |
31875053 |
ctcattattataggcttcaaatagtctttgctcacttcgtctatagac |
31875100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 271
Target Start/End: Original strand, 31881544 - 31881595
Alignment:
| Q |
220 |
caatattataggcttcaaataatctttgctcacttggtctatagactgaaat |
271 |
Q |
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| T |
31881544 |
caatatcataggcttcaaataccctttgctcacttcgtctatagacttaaat |
31881595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 31900142 - 31900074
Alignment:
| Q |
30 |
ttcgattagcaagcatatatttcctttactctgaaaattaaggatatatagctagcatgttagaatataat |
100 |
Q |
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| T |
31900142 |
ttcgattagcaaacatat--ttcctttactctgaaaattaaggatatatagctagcatgttagtatataat |
31900074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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