View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18836_low_22 (Length: 288)
Name: NF18836_low_22
Description: NF18836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18836_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 56 - 273
Target Start/End: Original strand, 4002534 - 4002751
Alignment:
| Q |
56 |
agaaatatgaaatcataatatacatacaaattttgaattggcggcaccaatgcagcagcaagagaaagaacaggaaacgattgaatccttttggcttctc |
155 |
Q |
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| T |
4002534 |
agaaatatgaaatcataatatacatacaaattttgaattggcggcaccaatgcagcagcaagagaaagaacaggaaacgattgaatccttttggcttctc |
4002633 |
T |
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| Q |
156 |
tccaaaacaatctaacaacaaaacttgaaatcttccccaaactcacacgttcacaagttttcctcttcgatccaaaaccaaaaccaaacctaggtgccac |
255 |
Q |
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| T |
4002634 |
tccaaaacaatctaacaacaaaacttgaaatcttccccaaactcacacgttcacaagttttcctcttcgatccaaaaccaaaaccaaacctaggtgccac |
4002733 |
T |
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| Q |
256 |
attattcgttatcacagg |
273 |
Q |
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| T |
4002734 |
attattcgttatcacagg |
4002751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 4002369 - 4002404
Alignment:
| Q |
20 |
gaccccaactcccagtataataaataatattaacaa |
55 |
Q |
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| T |
4002369 |
gaccccaactcccagtataataaataatattaacaa |
4002404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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