View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18836_low_27 (Length: 250)
Name: NF18836_low_27
Description: NF18836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18836_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 34559330 - 34559110
Alignment:
| Q |
16 |
atcattaatatattcctccatcctccaccctcctgaacacgacattggtttaaaggaacaactctatgactagtgtagttatatttggttggattcctct |
115 |
Q |
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||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34559330 |
atcattaatatattcctccattctccaccctcatgaacacgacattggtttaatggaacaactctatgactagtgtagttatatttggttggattcctct |
34559231 |
T |
|
| Q |
116 |
tatcnnnnnnnnnnnnnnnnnctaagaaaaatatcttaaataccgatcgtaattctggacttttagcgaccatcaagagaaaagtttgacgggattaagt |
215 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||| |
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| T |
34559230 |
tatctttttattttttattttctaagaaagatatcttaaataccgatcgtaattctggacttttagccactatcaagagaaaagtttgacgggatcaagt |
34559131 |
T |
|
| Q |
216 |
aaatgttcatgagacatttct |
236 |
Q |
| |
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||||||||||||||||||||| |
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| T |
34559130 |
aaatgttcatgagacatttct |
34559110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 34558908 - 34558687
Alignment:
| Q |
16 |
atcattaatatattcctccatcctccaccctcctgaacacgacattg-gtttaaaggaacaactctatgactagtgtagttatatttggttggattcctc |
114 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34558908 |
atcattaatatattcctccttcctccaccctcctgaacacgacatcgtgtttaagggaacaactctatgactagtgtagttatctttggttggattcctc |
34558809 |
T |
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| Q |
115 |
ttatcnnnnnnnnnnnnnnnnnctaagaaaaatatcttaaataccgatcgtaattctggacttttagcgaccatcaagagaaaagtttgacgggattaag |
214 |
Q |
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||||| ||||||||||||||||||||||| ||||||||||||||||||| || || ||||||||||||||||||| ||| ||| |
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| T |
34558808 |
ttatctttttattttttattttctaagaaaaatatcttaaataccaatcgtaattctggacttttggccactgtcaagagaaaagtttgacgagatcaag |
34558709 |
T |
|
| Q |
215 |
taaatgttcatgagacatttct |
236 |
Q |
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||||||||| |||||||||||| |
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| T |
34558708 |
taaatgttcttgagacatttct |
34558687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 48891493 - 48891595
Alignment:
| Q |
16 |
atcattaatatattcctccatcctccaccctcctgaacacgacattg-gtttaaaggaacaactctatgactagtgtagttatatttggttggattcctc |
114 |
Q |
| |
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||||||||||||||||||| | ||||||| | |||||||||||| |||||| |||||||||||| ||||||||||||||| |||||||| ||||||| |
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| T |
48891493 |
atcattaatatattcctcctctcaacaccctcttaaacacgacattgagtttaagggaacaactctacgactagtgtagttatctttggttgaattcctc |
48891592 |
T |
|
| Q |
115 |
tta |
117 |
Q |
| |
|
||| |
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|
| T |
48891593 |
tta |
48891595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 34559967 - 34559900
Alignment:
| Q |
168 |
ttctggacttttagcgaccatcaagagaaaagtttgacgggattaagtaaatgttcatgagacatttc |
235 |
Q |
| |
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|||| |||||||||| |||||||||| ||||||||||| ||| |||||||||||||| | ||||||| |
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| T |
34559967 |
ttctagacttttagcaaccatcaagaaaaaagtttgacatgatcaagtaaatgttcatcaaacatttc |
34559900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 34559593 - 34559531
Alignment:
| Q |
173 |
gacttttagcgaccatcaagagaaaagtttgacgggattaagtaaatgttcatgagacatttc |
235 |
Q |
| |
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|||||||||| || ||||||| ||||| ||||| |||||||||||||||| ||||| ||||| |
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| T |
34559593 |
gacttttagccactatcaagaaaaaagattgacatgattaagtaaatgttcttgagagatttc |
34559531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 48891198 - 48891258
Alignment:
| Q |
176 |
ttttagcgaccatcaagagaaaagtttgacgggattaagtaaatgttcatgagacatttct |
236 |
Q |
| |
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||||||| ||| |||||| ||| |||||||| ||| ||||| |||||||||||||||||| |
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| T |
48891198 |
ttttagccaccgtcaagaaaaatgtttgacgagatctagtaagtgttcatgagacatttct |
48891258 |
T |
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