View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18836_low_28 (Length: 250)

Name: NF18836_low_28
Description: NF18836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18836_low_28
NF18836_low_28
[»] chr5 (3 HSPs)
chr5 (4-246)||(23958468-23958705)
chr5 (80-132)||(20322902-20322954)
chr5 (52-129)||(9845788-9845865)
[»] chr6 (5 HSPs)
chr6 (4-129)||(20850707-20850833)
chr6 (156-225)||(20850617-20850686)
chr6 (16-132)||(34068117-34068234)
chr6 (10-126)||(31961565-31961682)
chr6 (218-246)||(20850205-20850233)
[»] chr7 (2 HSPs)
chr7 (10-63)||(8853573-8853627)
chr7 (52-132)||(19813559-19813639)
[»] chr3 (2 HSPs)
chr3 (16-63)||(4644918-4644966)
chr3 (10-123)||(18963547-18963661)
[»] chr4 (2 HSPs)
chr4 (24-126)||(16987933-16988036)
chr4 (210-246)||(16988114-16988150)
[»] chr2 (1 HSPs)
chr2 (59-114)||(28155294-28155349)


Alignment Details
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 4 - 246
Target Start/End: Original strand, 23958468 - 23958705
Alignment:
Q  4 atctcgaagaatatgtatacatgcttgttcctcaaggtatcactacttc-aaaccaaatcaagtccgtaaacttctcaaatcactctatggtctcaagca 102  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  23958468 atctccaagaagatgtatacatgcttgttcctcaaggtatcactacttccaaaccaaatcaagtctgtaaacttctcaaatcactctatggtctaaagca 23958567  T
Q  103 agctagcaggaagttgtatgagaaacttaccnnnnnnnnnnnnnnnnnngaaaatcactatactcaatccaatggtgaccactctttgttcataaagcac 202  Q
    |||||||||||||||||||||||||||||||                   |||||||||||||||||||||||  || ||||||||||||||||||||||    
T  23958568 agctagcaggaagttgtatgagaaacttacctctcttcttcttc------aaaatcactatactcaatccaattctggccactctttgttcataaagcac 23958661  T
Q  203 actaccacttcattcacagttttactggtttatgttgatgatgt 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  23958662 actaccacttcattcacagttttactggtttatgttgatgatgt 23958705  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 132
Target Start/End: Complemental strand, 20322954 - 20322902
Alignment:
Q  80 aaatcactctatggtctcaagcaagctagcaggaagttgtatgagaaacttac 132  Q
    ||||| |||||||||||||||||||| || ||||||| |||||| ||||||||    
T  20322954 aaatccctctatggtctcaagcaagcaagtaggaagtggtatgataaacttac 20322902  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 9845865 - 9845788
Alignment:
Q  52 caaaccaaatcaagtccgtaaacttctcaaatcactctatggtctcaagcaagctagcaggaagttgtatgagaaact 129  Q
    |||||| ||||||||  |||||||| | || ||||||||||| ||||| |||||||||||  | | ||||||||||||    
T  9845865 caaacctaatcaagtttgtaaacttgttaagtcactctatggactcaaacaagctagcagacaatggtatgagaaact 9845788  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 20850833 - 20850707
Alignment:
Q  4 atctcgaagaatatgtatacatgcttgttcctcaaggtatcactacttc-aaaccaaatcaagtccgtaaacttctcaaatcactctatggtctcaagca 102  Q
    ||||| ||||| |||| || |||||| |||||||||| ||||| ||||| ||||||||| | ||  ||||||||||||||||||| |||| ||| |||||    
T  20850833 atctccaagaagatgtttatatgcttattcctcaaggcatcaccacttccaaaccaaattaggtttgtaaacttctcaaatcactatatgttcttaagca 20850734  T
Q  103 agctagcaggaagttgtatgagaaact 129  Q
    ||| ||||| |||| ||||||||||||    
T  20850733 agcaagcagaaagtggtatgagaaact 20850707  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 20850686 - 20850617
Alignment:
Q  156 atcactatactcaatccaatggtgaccactctttgttcataaagcacactaccacttcattcacagtttt 225  Q
    |||||||||| ||||| |||| |||||||||||||||||||||| | ||| |||||||||||| ||||||    
T  20850686 atcactatacccaatcaaatgctgaccactctttgttcataaagaaaactgccacttcattcatagtttt 20850617  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 34068117 - 34068234
Alignment:
Q  16 atgtatacatgcttgttcctcaaggtatcactactt-caaaccaaatcaagtccgtaaacttctcaaatcactctatggtctcaagcaagctagcaggaa 114  Q
    |||| ||||||||||||||||||||||||||| ||| |||||| ||||| ||| | |||||  | ||||||||||||||  | || || || || || ||    
T  34068117 atgtttacatgcttgttcctcaaggtatcactccttccaaacccaatcaggtcagcaaactagttaaatcactctatggattgaaacaggccagtagaaa 34068216  T
Q  115 gttgtatgagaaacttac 132  Q
    || |||||||||||||||    
T  34068217 gtggtatgagaaacttac 34068234  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 126
Target Start/End: Original strand, 31961565 - 31961682
Alignment:
Q  10 aagaatatgtatacatgcttgttcctcaaggtatcactacttcaaa-ccaaatcaagtccgtaaacttctcaaatcactctatggtctcaagcaagctag 108  Q
    ||||| |||| |||||| |||| ||||||||| |||  ||| |||| || ||||||||| | |||||  | ||||| || |||||||| |||||||||||    
T  31961565 aagaagatgtgtacatgattgtgcctcaaggtgtcaacactacaaaacccaatcaagtctgcaaactcatgaaatctctttatggtcttaagcaagctag 31961664  T
Q  109 caggaagttgtatgagaa 126  Q
    ||| |||| |||||||||    
T  31961665 cagaaagtggtatgagaa 31961682  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 246
Target Start/End: Complemental strand, 20850233 - 20850205
Alignment:
Q  218 acagttttactggtttatgttgatgatgt 246  Q
    |||||||||||||||||||||||||||||    
T  20850233 acagttttactggtttatgttgatgatgt 20850205  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 8853573 - 8853627
Alignment:
Q  10 aagaatatgtatacatgcttgttcctcaaggtatcactactt-caaaccaaatca 63  Q
    ||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  8853573 aagaagatgtttacatgcttgttcctcaaggtatcactacttccaaaccaaatca 8853627  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 132
Target Start/End: Complemental strand, 19813639 - 19813559
Alignment:
Q  52 caaaccaaatcaagtccgtaaacttctcaaatcactctatggtctcaagcaagctagcaggaagttgtatgagaaacttac 132  Q
    |||||||||||||||  |||||||  | ||||| ||||||||  | |||||||||||||| |||| |||||| || |||||    
T  19813639 caaaccaaatcaagtttgtaaactaataaaatctctctatggattgaagcaagctagcagaaagtggtatgaaaagcttac 19813559  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 4644966 - 4644918
Alignment:
Q  16 atgtatacatgcttgttcctcaaggtatcactactt-caaaccaaatca 63  Q
    |||| |||||| |||||||||||||||||||||||| ||||||||||||    
T  4644966 atgtttacatgattgttcctcaaggtatcactacttgcaaaccaaatca 4644918  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 18963661 - 18963547
Alignment:
Q  10 aagaatatgtatacatgcttgttcctcaaggtatcactacttc-aaaccaaatcaagtccgtaaacttctcaaatcactctatggtctcaagcaagctag 108  Q
    ||||| |||| || |||||||| || |||||| |||||||||| ||||| ||||||||  | || ||  | ||||| || |||| |||||||||||||||    
T  18963661 aagaagatgtgtatatgcttgtaccacaaggtgtcactacttccaaacctaatcaagtttgaaagctcttaaaatctctttatgttctcaagcaagctag 18963562  T
Q  109 caggaagttgtatga 123  Q
    ||| |||| ||||||    
T  18963561 cagaaagtggtatga 18963547  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 16987933 - 16988036
Alignment:
Q  24 atgcttgttcctcaaggtatcactacttc-aaaccaaatcaagtccgtaaacttctcaaatcactctatggtctcaagcaagctagcaggaagttgtatg 122  Q
    ||||||||||| ||||| |||||| | || ||||||||||||||  | |||||  | ||||| ||||||||||| || ||||| ||||| |||| |||||    
T  16987933 atgcttgttccacaaggcatcactccctccaaaccaaatcaagtttgcaaactcattaaatccctctatggtcttaaacaagcaagcagaaagtggtatg 16988032  T
Q  123 agaa 126  Q
    ||||    
T  16988033 agaa 16988036  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 246
Target Start/End: Original strand, 16988114 - 16988150
Alignment:
Q  210 cttcattcacagttttactggtttatgttgatgatgt 246  Q
    ||||||||||||||||||| || ||||||||||||||    
T  16988114 cttcattcacagttttacttgtgtatgttgatgatgt 16988150  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 28155349 - 28155294
Alignment:
Q  59 aatcaagtccgtaaacttctcaaatcactctatggtctcaagcaagctagcaggaa 114  Q
    ||||||||  |||||||||  ||||| |||||||||||||||||| ||||||||||    
T  28155349 aatcaagtttgtaaacttcataaatctctctatggtctcaagcaacctagcaggaa 28155294  T

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