View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18836_low_3 (Length: 534)

Name: NF18836_low_3
Description: NF18836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18836_low_3
NF18836_low_3
[»] chr5 (4 HSPs)
chr5 (6-517)||(225527-226033)
chr5 (28-130)||(39576553-39576655)
chr5 (31-130)||(4146708-4146807)
chr5 (39-87)||(3561341-3561389)
[»] chr8 (5 HSPs)
chr8 (36-135)||(9903119-9903218)
chr8 (28-135)||(9860823-9860930)
chr8 (40-135)||(27361197-27361292)
chr8 (39-135)||(9842193-9842289)
chr8 (39-135)||(9847223-9847319)
[»] chr1 (2 HSPs)
chr1 (46-129)||(46671869-46671951)
chr1 (39-87)||(5054052-5054100)
[»] chr6 (1 HSPs)
chr6 (46-135)||(112390-112479)
[»] scaffold0658 (1 HSPs)
scaffold0658 (40-135)||(2605-2700)


Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 6 - 517
Target Start/End: Original strand, 225527 - 226033
Alignment:
Q  6 agagagaagaattacgaaggcaagaaaaccatgcattttagttacaatgtcaagactaaacaactgacaaagattgagggcactgttgtgggcgatattg 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  225527 agagagaagaattacgaaggcaagaaaaccatgcattttagttacaatgtcaagactagacaactgacaaagattgagggcactgttgtgggtgatattg 225626  T
Q  106 aagtatggcttcacaccaacagtctagttttattaagaaggacaggaacaatcatttgtttaaaaataaaggaaatggtcatatgtaagattgagtaaaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  225627 aagtatggcttcacaccaacagtctagttttattaagaaggacaggaacaatcatttgtttaaaaataaaggaaatggtcatatgtaagattgagtaaaa 225726  T
Q  206 actaaattatggataatggtacttggatatttattttgtgatagtgctttgataagcatacgaggaagggaaatagaaatagtgaaatgtaagattcttg 305  Q
    |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  225727 actaaattatggata---gtacttggatatttattttgtgatagtgctttgataagcatacgaggaagggaaatagaaatagtgaaatgtaagattcttg 225823  T
Q  306 ttacttaatgatgataaataagttaaattggaactctttgtgatcaattgaatgatcttctgcttcactgtgtagatgtgtccctagctttcttattgat 405  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  225824 ttacttaatgatgataaataagttaaattggaactc--tgtgatcaattgaatgctcttctgcttcactgtgtagatgtgtccctagctttcttattgat 225921  T
Q  406 tgcaatgccaagtttnnnnnnnnnnnnnnnnnnnnccccattttcatatttcacctgcattgaaagttgaaacactccaccaaatatgaccaagagttct 505  Q
    |||||||||||||||                    || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  225922 tgcaatgccaagtttaaaaaaataaaaataaaaaaccacattttcatatttcacctgcattgaaagttgaaacactgcaccaaatatgaccaagagttct 226021  T
Q  506 ctaatacttgtt 517  Q
    ||||||||||||    
T  226022 ctaatacttgtt 226033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 28 - 130
Target Start/End: Original strand, 39576553 - 39576655
Alignment:
Q  28 agaaaaccatgcattttagttacaatgtcaagactaaacaactgacaaagattgagggcactgttgtgggcgatattgaagtatggcttcacaccaacag 127  Q
    |||||| ||| ||||||||||||||||||||||| |||||| |||||||||||||||||| ||    ||| ||| ||||||||||||||||||| |||||    
T  39576553 agaaaaacatacattttagttacaatgtcaagaccaaacaattgacaaagattgagggcattgcctcgggtgattttgaagtatggcttcacactaacag 39576652  T
Q  128 tct 130  Q
    |||    
T  39576653 tct 39576655  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 4146708 - 4146807
Alignment:
Q  31 aaaccatgcattttagttacaatgtcaagactaaacaactgacaaagattgagggcactgttgtgggcgatattgaagtatggcttcacaccaacagtct 130  Q
    ||||||||||||||||||||||||||||||  |||| ||| |||||||||||   || ||||||||| |||||| | |||||||||||||| ||||||||    
T  4146708 aaaccatgcattttagttacaatgtcaagatcaaacgactaacaaagattgacaacattgttgtgggtgatattaaggtatggcttcacactaacagtct 4146807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 3561389 - 3561341
Alignment:
Q  39 cattttagttacaatgtcaagactaaacaactgacaaagattgagggca 87  Q
    |||||| |||||||||||||||||| || | |||||||||| |||||||    
T  3561389 cattttggttacaatgtcaagactagacgattgacaaagatagagggca 3561341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 36 - 135
Target Start/End: Original strand, 9903119 - 9903218
Alignment:
Q  36 atgcattttagttacaatgtcaagactaaacaactgacaaagattgagggcactgttgtgggcgatattgaagtatggcttcacaccaacagtctagttt 135  Q
    ||||||||| |||||||||| ||||| |||||| ||| ||||||||||| || ||  ||||| ||| || |||||||| ||||||| |||||||||||||    
T  9903119 atgcatttttgttacaatgtgaagaccaaacaattgataaagattgaggacattgacgtgggagattttaaagtatggtttcacactaacagtctagttt 9903218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 28 - 135
Target Start/End: Original strand, 9860823 - 9860930
Alignment:
Q  28 agaaaaccatgcattttagttacaatgtcaagactaaacaactgacaaagattgagggcactgttgtgggcgatattgaagtatggcttcacaccaacag 127  Q
    |||||| ||| |||||| ||||||||||||| |||| |||| |||||| ||| ||||||| || |||||| ||| |||| ||||||  |||||  |||||    
T  9860823 agaaaaacattcattttggttacaatgtcaaaactagacaattgacaatgatcgagggcattgatgtgggtgattttgaggtatggtctcacattaacag 9860922  T
Q  128 tctagttt 135  Q
    | ||||||    
T  9860923 tttagttt 9860930  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 40 - 135
Target Start/End: Original strand, 27361197 - 27361292
Alignment:
Q  40 attttagttacaatgtcaagactaaacaactgacaaagattgagggcactgttgtgggcgatattgaagtatggcttcacaccaacagtctagttt 135  Q
    ||||| |||||||||||||||||| | |||||||||| ||||| |||| ||  |||||  ||  ||| ||||||||||| ||||||| ||||||||    
T  27361197 atttttgttacaatgtcaagactagagaactgacaaaaattgatggcattgcagtgggtaattatgatgtatggcttcataccaacactctagttt 27361292  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 135
Target Start/End: Original strand, 9842193 - 9842289
Alignment:
Q  39 cattttagttacaatgtcaagactaaacaactgacaaagattgagggcactgttgtgggcgatattgaagtatggcttcacaccaacagtctagttt 135  Q
    |||||| |||||||||| ||||| |  ||| ||||||||||||||| || ||  || ||| |  |||||||||| |||||||| |||||||||||||    
T  9842193 cattttggttacaatgtgaagaccaggcaattgacaaagattgaggacattgacgttggcaactttgaagtatgtcttcacactaacagtctagttt 9842289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 135
Target Start/End: Original strand, 9847223 - 9847319
Alignment:
Q  39 cattttagttacaatgtcaagactaaacaactgacaaagattgagggcactgttgtgggcgatattgaagtatggcttcacaccaacagtctagttt 135  Q
    |||||| |||||||||| ||||| |  ||| |||| |||||| ||| ||  | || |||  |||||||||||||||||||||| |||| ||||||||    
T  9847223 cattttggttacaatgtgaagaccaggcaattgactaagattaaggacatcgatgagggaaatattgaagtatggcttcacactaacaatctagttt 9847319  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 129
Target Start/End: Complemental strand, 46671951 - 46671869
Alignment:
Q  46 gttacaatgtcaagactaaacaactgacaaagattgagggcactgttgtgggcgatattgaagtatggcttcacaccaacagtc 129  Q
    |||||||||||||||| | ||||||||||| |||| |||||| || |||||||||| || | |||||||||||||| |||||||    
T  46671951 gttacaatgtcaagaccagacaactgacaatgattaagggcattgatgtgggcgat-ttaaggtatggcttcacactaacagtc 46671869  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 5054100 - 5054052
Alignment:
Q  39 cattttagttacaatgtcaagactaaacaactgacaaagattgagggca 87  Q
    |||||| |||||||||||||||| |||||  |||||||||| |||||||    
T  5054100 cattttggttacaatgtcaagaccaaacatttgacaaagatcgagggca 5054052  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 46 - 135
Target Start/End: Complemental strand, 112479 - 112390
Alignment:
Q  46 gttacaatgtcaagactaaacaactgacaaagattgagggcactgttgtgggcgatattgaagtatggcttcacaccaacagtctagttt 135  Q
    |||||||||||||||||| |||||||||||||||||| | || | | |||||| || |||||| ||||||||| || || | ||||||||    
T  112479 gttacaatgtcaagactagacaactgacaaagattgatgacattatagtgggccattttgaagcatggcttcatacaaatactctagttt 112390  T

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Target: scaffold0658 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 40 - 135
Target Start/End: Complemental strand, 2700 - 2605
Alignment:
Q  40 attttagttacaatgtcaagactaaacaactgacaaagattgagggcactgttgtgggcgatattgaagtatggcttcacaccaacagtctagttt 135  Q
    ||||| |||||||||||||||||| | |||||||||| ||||| |||| ||  |||||  ||  ||| ||||||||||| ||||||| ||||||||    
T  2700 atttttgttacaatgtcaagactagagaactgacaaaaattgatggcattgcagtgggtaattatgatgtatggcttcataccaacactctagttt 2605  T

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