View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18836_low_30 (Length: 237)
Name: NF18836_low_30
Description: NF18836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18836_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 50558767 - 50558918
Alignment:
| Q |
1 |
gaagaggttcgcccaaatttatcaaaacttatatcaaaccaatcatagacctccttatgaatagcatggtatctacacaaaaacaccgagaaaagacgat |
100 |
Q |
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| T |
50558767 |
gaagaggttcgcccaaatttatcaaaacttatatcaaaccaatcgtagacctccttatgaatagcatggtatctacacaaaaaaaccgagaaaagacgat |
50558866 |
T |
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| Q |
101 |
tattgaaattctgctttaggagtaagcaagatgagtgtaaaaccattgaatc |
152 |
Q |
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| T |
50558867 |
tattgaaattctgctttaggagtaagcaagatgagtgtaaaaccattgaatc |
50558918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 50558949 - 50558987
Alignment:
| Q |
183 |
ttgatagtacttgtcagcaatttgtttaggagaacaatt |
221 |
Q |
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| T |
50558949 |
ttgatagtacttgtcagcaatttgtttaggagaacaatt |
50558987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 29773476 - 29773538
Alignment:
| Q |
13 |
ccaaatttatcaaaacttatatcaaaccaatcatagacctccttatgaatagcatggtatcta |
75 |
Q |
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| T |
29773476 |
ccaaattcatcaaagcttatattgaaccaatcgtagacttccttgtgaatagcatggtatcta |
29773538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 82
Target Start/End: Original strand, 50569071 - 50569104
Alignment:
| Q |
49 |
acctccttatgaatagcatggtatctacacaaaa |
82 |
Q |
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| T |
50569071 |
acctccttattaatagcatggtatctacacaaaa |
50569104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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