View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18836_low_31 (Length: 233)
Name: NF18836_low_31
Description: NF18836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18836_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 38100609 - 38100817
Alignment:
| Q |
16 |
acatcatctaggctcctgcttcaaattagtcataa----------gcacaggagttaagttcattttaaagaccttacatacaacttatttcaacttagc |
105 |
Q |
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| T |
38100609 |
acatcatctaggctcctgcttcaaattagtcataaataatcataagcacaaaaattaagttcattttaaagacctta-atacaacttatttgaacttagc |
38100707 |
T |
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| Q |
106 |
ttatgacataagtacttgtttaaccattagatgtcaactcagtagtaagattttgataatgtaattttaagggatagagttcaaatccccttcaatttgg |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38100708 |
ttatgacataagtacttgtttaaccattagatgtcaactcagtagtaagattttgataatgtaattttaagggatagagttcaaatccccttcaatttgg |
38100807 |
T |
|
| Q |
206 |
ttgtaaaatt |
215 |
Q |
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|||||||||| |
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| T |
38100808 |
ttgtaaaatt |
38100817 |
T |
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