View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18836_low_4 (Length: 518)

Name: NF18836_low_4
Description: NF18836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18836_low_4
NF18836_low_4
[»] scaffold0043 (1 HSPs)
scaffold0043 (427-492)||(57796-57864)
[»] chr6 (2 HSPs)
chr6 (327-467)||(8321779-8321914)
chr6 (422-492)||(12973008-12973079)
[»] chr2 (1 HSPs)
chr2 (422-492)||(27867567-27867638)
[»] chr1 (5 HSPs)
chr1 (427-479)||(16259876-16259928)
chr1 (427-492)||(74025-74093)
chr1 (422-492)||(25131047-25131120)
chr1 (59-95)||(11898199-11898235)
chr1 (380-416)||(13091282-13091318)
[»] chr7 (1 HSPs)
chr7 (422-492)||(20146378-20146449)
[»] chr4 (2 HSPs)
chr4 (422-492)||(20318999-20319070)
chr4 (394-470)||(22216036-22216113)
[»] chr3 (1 HSPs)
chr3 (430-492)||(20097476-20097541)


Alignment Details
Target: scaffold0043 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 427 - 492
Target Start/End: Original strand, 57796 - 57864
Alignment:
Q  427 gtgagattttgagccaaatatattt--cactctt-ctactataattctctctatatgtgtgttccatgt 492  Q
    ||||||||||||||||||||||| |  ||||||| ||||||||||||| ||||||||||||||||||||    
T  57796 gtgagattttgagccaaatatatattccactctttctactataattctttctatatgtgtgttccatgt 57864  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 327 - 467
Target Start/End: Original strand, 8321779 - 8321914
Alignment:
Q  327 gttagcttacccccgaagttcaagagcttgataacttttggcgcttgttggagaagatactcgtcataatcagcatctcttttctatataatataaaccg 426  Q
    ||||| |||||| ||||||||||||||  ||||||| |||  |||||| |   ||||||||| ||||||||| || |||||| |||||||  |||| | |    
T  8321779 gttagtttaccctcgaagttcaagagcacgataactattgatgcttgtgg---aagatactcatcataatcaccacctcttt-ctatatagcataa-ctg 8321873  T
Q  427 gtgagattttgagccaaatatatttcactcttctactataa 467  Q
    |||| | |||||| |||||||||| ||||||||||||||||    
T  8321874 gtgatactttgagtcaaatatattccactcttctactataa 8321914  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 492
Target Start/End: Complemental strand, 12973079 - 12973008
Alignment:
Q  422 aaccggtgagattttgagccaaat--atatttcactcttctactataattctctc-tatatgtgtgttccatgt 492  Q
    ||||||||||||||||||||||||  ||||| |||| ||||||| ||||||| || ||||||||||||||||||    
T  12973079 aaccggtgagattttgagccaaatatatattccact-ttctact-taattctttcatatatgtgtgttccatgt 12973008  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 422 - 492
Target Start/End: Complemental strand, 27867638 - 27867567
Alignment:
Q  422 aaccggtgagattttgagccaaatatattt-cactcttctactataattctctc-tatatgtgtgttccatgt 492  Q
    ||||||||||||||| |||||||||||||| |||| |||||||||| |||| || ||||||||||||||||||    
T  27867638 aaccggtgagattttaagccaaatatatttccact-ttctactatagttctttcatatatgtgtgttccatgt 27867567  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 479
Target Start/End: Complemental strand, 16259928 - 16259876
Alignment:
Q  427 gtgagattttgagccaaatatatttcactcttctactataattctctctatat 479  Q
    |||||||||||||||||||| |||| |||||||||||| |||||| |||||||    
T  16259928 gtgagattttgagccaaataaattttactcttctactacaattctttctatat 16259876  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 427 - 492
Target Start/End: Complemental strand, 74093 - 74025
Alignment:
Q  427 gtgagattttgagccaaatatattt--cactctt-ctactataattctctctatatgtgtgttccatgt 492  Q
    ||||||||||||||||||||||| |  ||||||| |||||| |||| | ||||||||||||||||||||    
T  74093 gtgagattttgagccaaatatatattccactctttctactacaattatttctatatgtgtgttccatgt 74025  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 492
Target Start/End: Complemental strand, 25131120 - 25131047
Alignment:
Q  422 aaccggtgagattttgagccaaa--tatatttcact-cttctactataattctctctatatgtgtgttccatgt 492  Q
    |||||||||||||||||||||||  |||||| ||||  |||| |||||||||| || |||||| ||||||||||    
T  25131120 aaccggtgagattttgagccaaatttatattccactatttcttctataattctttccatatgtatgttccatgt 25131047  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 11898199 - 11898235
Alignment:
Q  59 tgctttgaagaggttcaagggcacaacgtagtcttat 95  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  11898199 tgctttgaagaggttcaagggcacaacatagacttat 11898235  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 416
Target Start/End: Complemental strand, 13091318 - 13091282
Alignment:
Q  380 aagatactcgtcataatcagcatctcttttctatata 416  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  13091318 aagatactcatcataatcaccatctcttttctatata 13091282  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 422 - 492
Target Start/End: Original strand, 20146378 - 20146449
Alignment:
Q  422 aaccggtgagattttgagccaaatatatttcactctt-ctactataattctctctatatgtgtgttccatgt 492  Q
    ||||||||||||||||||  ||||||||| |||| || ||||||||||||| | | ||||||||||||||||    
T  20146378 aaccggtgagattttgaggaaaatatattccactatttctactataattctttttgtatgtgtgttccatgt 20146449  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 422 - 492
Target Start/End: Original strand, 20318999 - 20319070
Alignment:
Q  422 aaccggtgagattttgagccaaatatatttcactcttctactataattctctctata-tgtgtgttccatgt 492  Q
    ||||| ||||||||||||  ||||||||| |||||||||||||||||||| | |||| || |||||||||||    
T  20318999 aaccgatgagattttgagttaaatatattccactcttctactataattctttatatattgagtgttccatgt 20319070  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 394 - 470
Target Start/End: Original strand, 22216036 - 22216113
Alignment:
Q  394 aatcagcatctcttttctatataatataaaccggtgagattttgagccaaatat--atttcactcttctactataattc 470  Q
    ||||| |||||||||||||||||  |||| ||||||||| ||||||||||||||  | | |||||||||||||||||||    
T  22216036 aatcaccatctcttttctatatagcataa-ccggtgagaatttgagccaaatattcaatccactcttctactataattc 22216113  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 492
Target Start/End: Original strand, 20097476 - 20097541
Alignment:
Q  430 agattttgagccaaatatat--ttcactc-ttctactataattctctctatatgtgtgttccatgt 492  Q
    ||||||||| ||||||||||  ||||||| ||||||||||||||| |||||||||||||| |||||    
T  20097476 agattttgacccaaatatatagttcactcattctactataattctttctatatgtgtgtttcatgt 20097541  T

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