View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18836_low_7 (Length: 450)
Name: NF18836_low_7
Description: NF18836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18836_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 8 - 436
Target Start/End: Original strand, 5724062 - 5724488
Alignment:
| Q |
8 |
tccaaagaaacaacatcccatttcacaactatgccactcaaaaacacaacatcgagacatcactcaacaattatgcacgcatttgcatccactcgtatgt |
107 |
Q |
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| T |
5724062 |
tccaaagaaacaacatcccatt-cacaactatgccactcaaaaacacaacatcgagacatcactcaacaattatgcacgcatttgcaaccactcgtatgt |
5724160 |
T |
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| Q |
108 |
agttgtaaagtggcttacataattagtgtcttgactatcaaagcaatttaaaccgtgagtggatttgaaatgtaaaagataaacaatctccccttttcat |
207 |
Q |
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| T |
5724161 |
agttgtaaagtggcttacataatcagtgtcttgactatcaaagcaatttaaaccgtgagtggatttgaaatgtaaaagataaacaatctccccttttcat |
5724260 |
T |
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| Q |
208 |
tgaagagatcaagcatcatattcagatatatagttatttatctcaagaacaattaaaaatataaagacagaaattaagaaacatattttctaatttatcg |
307 |
Q |
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| T |
5724261 |
tgaagagatcaagcatcatattcagatatatagttatttatctcaagaacaattaaaaatataaagacagaaattaagaaacatattttctaatttatcg |
5724360 |
T |
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| Q |
308 |
cggagattgattttgatgactttatttatactcttaaaacttcaagaccaaatatgcttcacggcactttagttaaaaacaaatacttcacggcacaaat |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5724361 |
cggagattgattttgatgactttatttatactcttaaaacttcaagaccaaatatgcttcacggcactttagttaaaaa-aaatacttcacggcacaaat |
5724459 |
T |
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| Q |
408 |
tttaatcctctaggtaacatgattaattg |
436 |
Q |
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| T |
5724460 |
tttaatcctctaggtaacatgattaattg |
5724488 |
T |
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