View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18836_low_9 (Length: 393)
Name: NF18836_low_9
Description: NF18836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18836_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 46574054 - 46574426
Alignment:
| Q |
1 |
taagaacatatgatattcaaatgtaaagaggtaattggtgagtattaagtggcatagaggttttgatgggactaatgattattctttaatgtttggaata |
100 |
Q |
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| T |
46574054 |
taagaacatatgatattcaaatgtaaagaggtaattggtgagtattaagtggcatagaggttttgatgggactaatgattattctttaatgtttggaata |
46574153 |
T |
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| Q |
101 |
gaaaggaacaaagacacgaatcttgtatgaatcacaaattatcctgcgtttgtagctcagttggtgaactatgaatgttaaaggagagttaaaatggaga |
200 |
Q |
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| T |
46574154 |
gaaaggaacaaagacacgaatcttgtatgaatcacaaattatcctgcgtttgtagctcagttggcgaactatgaacattaaaggagagttaaaatggaga |
46574253 |
T |
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| Q |
201 |
ttatgggttagattttcaaaattcaacattttatttttctctctaacaatttaccaacgaccaacatttgtttgcttagactaaaatttggagtcaatta |
300 |
Q |
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| T |
46574254 |
ttatgggttagattttcgaaattcaacattttatttttctctctaacaatttaccaacgactaacatttgtttgctaagactaaaatttggagtcaatta |
46574353 |
T |
|
| Q |
301 |
caacaaacataagataccaagatgtacgtgaaacnnnnnnncgtaaaacccttacctggtgatatcatcttccatgagtataat |
384 |
Q |
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| T |
46574354 |
caacaaacgtaagataccaacatgta----aaacgta-------aaaacccttacctggtgatatcatcttccatgagtataat |
46574426 |
T |
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