View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18837_high_14 (Length: 343)
Name: NF18837_high_14
Description: NF18837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18837_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 22 - 327
Target Start/End: Complemental strand, 12014880 - 12014571
Alignment:
| Q |
22 |
ctgatatatttggtgtaccaaaaacac----gagagatctatgagcaggcgattgaatctggtcttccaaataaggatgcaaaactatgtgtttgaagta |
117 |
Q |
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| T |
12014880 |
ctgatatatttggtgtaccaaaaacacacacgagagatctatgagcatgcgattgaatctggtcttccaaataaggatgcaaaactatgtgtttgaagta |
12014781 |
T |
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| Q |
118 |
tgctgagctggaaagaagcgtaggagaaattgaacgttcccgtggagtatatgtatttgcctccaagtttgctgatccaccgtccgatcaagacttttgg |
217 |
Q |
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| T |
12014780 |
tgctgagctggaaagaagcgtaggagaaattgaacgttcccgtggagtatatgtatttgcctccaagtttgctcatccacggtccgatcaagacttttgg |
12014681 |
T |
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| Q |
218 |
aataagtggcgtgaatttgaggttcaacgtggaaatgaagacacctttagagaaatgcttcgaattaaaaggagtgtctctgcaagctacatccaggtta |
317 |
Q |
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| T |
12014680 |
aataagtggcgtgaatttgaggttcaacgtggaaatgaagacacctttagagaaatgcttcgaattaaaaggagtgtctctgcaagctacatccaggtta |
12014581 |
T |
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| Q |
318 |
ctttaatgtt |
327 |
Q |
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|||||||||| |
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| T |
12014580 |
ctttaatgtt |
12014571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 22 - 327
Target Start/End: Original strand, 3031380 - 3031686
Alignment:
| Q |
22 |
ctgatatatttggtgtaccaaaaacacgagagatctatgagcaggcgattgaatctggtcttccaaataaggatg-caaaactatgtgtttgaagtatgc |
120 |
Q |
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|||| |||||||| ||||| || ||||| ||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
3031380 |
ctgagatatttggggtacccaagacacgcgagatctatgagcaggcaattgaatctggtcttccagataaggatgtcaaaactatgtgtttgaagtatgc |
3031479 |
T |
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| Q |
121 |
tgagctggaaagaagcgtaggagaaattgaacgttcccgtggagtatatgtatttgcctccaagtttgctgatccaccgtccgatcaagacttttggaat |
220 |
Q |
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| T |
3031480 |
tgaactggaaagaagcttgggagaaattgaacgtgcccgtggagtatatgtatttgcctccaagtttgctgatccgcggtctgatccagacttttggaat |
3031579 |
T |
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| Q |
221 |
aagtggcgtgaatttgaggttcaacgtggaaatgaagacacctttagagaaatgcttcgaattaaaaggagtgtctctgcaagctacatccaggttactt |
320 |
Q |
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| |||| ||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
3031580 |
gattggcatgaatttgaggttcaacatggaaatgaggacacttttagagaaatgcttcgaattaaaaggagtgtctctgcaagctatagccaggttacta |
3031679 |
T |
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| Q |
321 |
taatgtt |
327 |
Q |
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||||||| |
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| T |
3031680 |
taatgtt |
3031686 |
T |
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