View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18837_high_17 (Length: 294)
Name: NF18837_high_17
Description: NF18837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18837_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 133 - 242
Target Start/End: Original strand, 23267637 - 23267746
Alignment:
| Q |
133 |
ttgaccaaccttggaattagaatttcgtttatccctttatttaggaggccaacaaggagcaattaccaagcagaggatatgtgatcctagcatcccgtca |
232 |
Q |
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| T |
23267637 |
ttgaccaaccctacaattagaagttcgtttatccctttatttaggaggccaacaaagagcaattaccaagcagaggatatgtgatcctagcatcccgcca |
23267736 |
T |
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| Q |
233 |
aggagattat |
242 |
Q |
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|||||||||| |
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| T |
23267737 |
aggagattat |
23267746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 23254286 - 23254321
Alignment:
| Q |
7 |
tagagaaattaatcgaggcttccgagatcaattata |
42 |
Q |
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| T |
23254286 |
tagagaaattaatcaaggcttccgagatcaattata |
23254321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 14654547 - 14654579
Alignment:
| Q |
180 |
gccaacaaggagcaattaccaagcagaggatat |
212 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
14654547 |
gccaacaaagagcaattaccaagcagaggatat |
14654579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 14664338 - 14664370
Alignment:
| Q |
180 |
gccaacaaggagcaattaccaagcagaggatat |
212 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
14664338 |
gccaacaaagagcaattaccaagcagaggatat |
14664370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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