View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18837_high_19 (Length: 282)

Name: NF18837_high_19
Description: NF18837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18837_high_19
NF18837_high_19
[»] chr8 (5 HSPs)
chr8 (7-175)||(11345241-11345409)
chr8 (12-175)||(11338721-11338883)
chr8 (7-175)||(11359119-11359287)
chr8 (12-169)||(11339564-11339721)
chr8 (174-266)||(11345639-11345731)
[»] chr4 (2 HSPs)
chr4 (34-153)||(23840465-23840583)
chr4 (34-153)||(23847339-23847459)
[»] chr7 (3 HSPs)
chr7 (47-173)||(24031019-24031145)
chr7 (12-123)||(24021582-24021693)
chr7 (43-108)||(23993355-23993420)
[»] chr6 (1 HSPs)
chr6 (7-77)||(19746834-19746904)


Alignment Details
Target: chr8 (Bit Score: 161; Significance: 6e-86; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 7 - 175
Target Start/End: Original strand, 11345241 - 11345409
Alignment:
Q  7 ggacatcatcaaaaccaaaaggcaaacaaaattgcatgtatgtctcagttgaaaggtcaagggaaacaatcttgaattgatcaacatgagtaatagactt 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11345241 ggacctcatcaaaaccaaaaggcaaacaaaattgcatgtatgtctcagttgaaaggtcaagggaaacaatcttgaattgatcaacatgagtaatagactt 11345340  T
Q  107 gtgatcataaaaaggataaaaatagttttcaatagccaaccagtaaatagtgcctctcaaatacacacc 175  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11345341 gtgttcataaaaaggataaaaatagttttcaatagccaaccagtaaatagtgcctctcaaatacacacc 11345409  T

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Target: chr8; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 11338721 - 11338883
Alignment:
Q  12 tcatcaaaaccaaaaggcaaacaaaattgcatgtatgtctcagttgaaaggtcaagggaaacaatcttgaattgatcaacatgagtaatagacttgtgat 111  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11338721 tcatcaagaccagaaggcaaacaaaattgcatgtatgtctcagttgaaagatcaagggaaacaatcttgaattgatcaacatgagtaatagacttgtgat 11338820  T
Q  112 cataaaaaggataaaaatagttttcaatagccaaccagtaaatagtgcctctcaaatacacacc 175  Q
     ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  11338821 -ataaaaaggataaaaatagttttgaatagccaaccagtaaatagtgcctctcaaatatacacc 11338883  T

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Target: chr8; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 7 - 175
Target Start/End: Original strand, 11359119 - 11359287
Alignment:
Q  7 ggacatcatcaaaaccaaaaggcaaacaaaattgcatgtatgtctcagttgaaaggtcaagggaaacaatcttgaattgatcaacatgagtaatagactt 106  Q
    |||| |||||||||||| ||||||   ||||||||||||||| |||||||||||| |||||||| ||||||||||| ||||||||||||||||||| |      
T  11359119 ggacctcatcaaaaccagaaggcagtgaaaattgcatgtatgcctcagttgaaagatcaagggagacaatcttgaactgatcaacatgagtaatagcccc 11359218  T
Q  107 gtgatcataaaaaggataaaaatagttttcaatagccaaccagtaaatagtgcctctcaaatacacacc 175  Q
     | | |||||||||||||||||||||| | |||||| ||| ||||||||||||| ||||||||||||||    
T  11359219 ataaccataaaaaggataaaaatagttctgaatagctaactagtaaatagtgccgctcaaatacacacc 11359287  T

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Target: chr8; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 12 - 169
Target Start/End: Original strand, 11339564 - 11339721
Alignment:
Q  12 tcatcaaaaccaaaaggcaaacaaaattgcatgtatgtctcagttgaaaggtcaagggaaacaatcttgaattgatcaacatgagtaatagacttgtgat 111  Q
    |||||||||||| |||| |||||||||||||| ||||||||| |||| || ||||||||||| |||||||||||||||||| ||||||||||||  | ||    
T  11339564 tcatcaaaaccagaaggtaaacaaaattgcatatatgtctcaattgatagatcaagggaaaccatcttgaattgatcaacacgagtaatagactcataat 11339663  T
Q  112 cataaaaaggataaaaatagttttcaatagccaaccagtaaatagtgcctctcaaata 169  Q
    ||| |||||| |||||||| || | |||||||||||||||||||||||| || |||||    
T  11339664 catgaaaagggtaaaaataattctgaatagccaaccagtaaatagtgccacttaaata 11339721  T

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Target: chr8; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 174 - 266
Target Start/End: Original strand, 11345639 - 11345731
Alignment:
Q  174 cctaatggttcagttccaacactgaaattcaaaccgcatagctgatggtctcgagtcccaaaagctctagttcctgttctcatggcagggttg 266  Q
    ||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||    
T  11345639 cctaatgtttcagttccaacactgaaattcaaaccgcatagctgactgtctcgagtcccaaacgctctagttcctgttctcatggcagggttg 11345731  T

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Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 34 - 153
Target Start/End: Complemental strand, 23840583 - 23840465
Alignment:
Q  34 aaaattgcatgtatgtctcagttgaaaggtcaagggaaacaatcttgaattgatcaacatgagtaatagacttgtgatcataaaaaggataaaaatagtt 133  Q
    ||||||| ||||||||||| || ||||| |||||||||| |||| ||| ||||||||||||||||||| |    | |||||||||||||| |||||||||    
T  23840583 aaaattggatgtatgtctcggtcgaaagatcaagggaaagaatcatgagttgatcaacatgagtaatacatgccttatcataaaaaggat-aaaatagtt 23840485  T
Q  134 ttcaatagccaaccagtaaa 153  Q
    ||  ||||||||||||||||    
T  23840484 ttgcatagccaaccagtaaa 23840465  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 153
Target Start/End: Original strand, 23847339 - 23847459
Alignment:
Q  34 aaaattgcatgtatgtctcagttgaaaggtcaagggaaacaatcttgaattgatcaacatgagtaatagacttgtgatcataaaaaggat-aaaaatagt 132  Q
    ||||||| ||||||||||| || ||||| |||||||||| ||||  || ||||||||||||||||||| |    | |||||||||||||| |||||||||    
T  23847339 aaaattggatgtatgtctcggtcgaaagatcaagggaaagaatcacgagttgatcaacatgagtaatacatccctcatcataaaaaggataaaaaatagt 23847438  T
Q  133 tttcaatagccaaccagtaaa 153  Q
    |||  ||||||||||| ||||    
T  23847439 tttgcatagccaaccaataaa 23847459  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 173
Target Start/End: Complemental strand, 24031145 - 24031019
Alignment:
Q  47 tgtctcagttgaaaggtcaagggaaacaatcttgaattgatcaacatgagtaatagacttgtgatcataaaaaggataaaaatagttttcaatagccaac 146  Q
    |||||| || ||||| |||||||||| ||||  ||| ||||||||||||||||||| ||  | ||||||| || ||| ||||||||| | |||||||||     
T  24031145 tgtctcggtcgaaagatcaagggaaataatcacgaagtgatcaacatgagtaatagtctcataatcataacaacgattaaaatagttctgaatagccaat 24031046  T
Q  147 cagtaaatagtgcctctcaaatacaca 173  Q
     |||||| |||||| ||||||| ||||    
T  24031045 gagtaaacagtgccactcaaatgcaca 24031019  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 24021693 - 24021582
Alignment:
Q  12 tcatcaaaaccaaaaggcaaacaaaattgcatgtatgtctcagttgaaaggtcaagggaaacaatcttgaattgatcaacatgagtaatagacttgtgat 111  Q
    ||||||||| |  |||||||  |||||||||||  |||||| || ||||| |||||||||||||||  |||| ||| |||||||||||||  || || ||    
T  24021693 tcatcaaaatcggaaggcaacaaaaattgcatggttgtctcggtcgaaagatcaagggaaacaatcacgaatcgattaacatgagtaataatctcgtaat 24021594  T
Q  112 cataaaaaggat 123  Q
    ||||| ||||||    
T  24021593 cataagaaggat 24021582  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 23993420 - 23993355
Alignment:
Q  43 tgtatgtctcagttgaaaggtcaagggaaacaatcttgaattgatcaacatgagtaatagacttgt 108  Q
    |||||||||| |||||||||||||| |||| |||||  ||||| ||| ||||| ||||||||||||    
T  23993420 tgtatgtctccgttgaaaggtcaagtgaaagaatctgaaattgctcagcatgaataatagacttgt 23993355  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 19746834 - 19746904
Alignment:
Q  7 ggacatcatcaaaaccaaaaggcaaacaaaattgcatgtatgtctcagttgaaaggtcaagggaaacaatc 77  Q
    |||| |||||||||||||| ||||   |||||||  ||||||||||||| ||||| |||||||||||||||    
T  19746834 ggacttcatcaaaaccaaatggcagcaaaaattgtgtgtatgtctcagtcgaaagatcaagggaaacaatc 19746904  T

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