View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18837_high_20 (Length: 280)
Name: NF18837_high_20
Description: NF18837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18837_high_20 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 14 - 280
Target Start/End: Complemental strand, 52761978 - 52761712
Alignment:
| Q |
14 |
tcatctatctgaattagcattatttatatactacattgataaatcttgtttaaatcaattcttcagcttaatgaagataaaagcccattccaacagacct |
113 |
Q |
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| T |
52761978 |
tcatctatctgaattagcattatttatatactacattgataaatcttgtttaaatcaattcttcagcttaatgaagataaaagcccattccaacagacct |
52761879 |
T |
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| Q |
114 |
acgcttcacaggtacctataacatctatgtatgcatttaaaaaggttgagactcctcaatttcaaatgattgtgtattgaactccaaaacaattaaatgc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52761878 |
acgcttcacaggtacctataacatctatgtatgcatttaaaaaggttgagactcttcaatttcaaatgattgtgtattgaactccaaaacaattaaatgc |
52761779 |
T |
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| Q |
214 |
ttcttttgattttcatttggaaatttgaccaaaatctatcattatcatgaaatctaattctgctaac |
280 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
52761778 |
ttcttttgattttcatttggaaatttgaccaagatctatcattatcatgaaatctaattctgctaac |
52761712 |
T |
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