View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18837_high_25 (Length: 265)
Name: NF18837_high_25
Description: NF18837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18837_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 22 - 260
Target Start/End: Original strand, 42378058 - 42378296
Alignment:
| Q |
22 |
agtccctactcccattattctccttcccatcctcttccttcttcaatcgttcaccaatcatcttctcaaatattccatcaaaacgaggcaccaaagcatt |
121 |
Q |
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| T |
42378058 |
agtccctactcccattattctccttcccatcctcttccttcttcaatcgttcaccaatcatcttctcaaatatcccatcaaagcgaggcaccaaagcatt |
42378157 |
T |
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| Q |
122 |
catatctttcacaacaccctgcaaatcaaaccgggccaacccaggnnnnnnntccgacaaattcggcttccccaatagctgcaccatctccgccaccgcc |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42378158 |
catatctttcacaacaccctgcaaatcaaaccgggccaacccaggaaaaaaatccgacaaattcggcttccccaatagctgcaccatctccgccaccgcc |
42378257 |
T |
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| Q |
222 |
tccctaaactccgcccctaaactctccctctctgctcct |
260 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |
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| T |
42378258 |
tccctaaactccgcccctaaactctccctctcttctcct |
42378296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 68 - 253
Target Start/End: Original strand, 42394019 - 42394204
Alignment:
| Q |
68 |
tcgttcaccaatcatcttctcaaatattccatcaaaacgaggcaccaaagcattcatatctttcacaacaccctgcaaatcaaaccgggccaacccaggn |
167 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||| | |||| |
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| T |
42394019 |
tcgttcaccaatcatcttttcaaatattccatcaaaacgaggcaccaaaagattcatatctttcacaataccctgcaaatcaaaccgagccagcgcagga |
42394118 |
T |
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| Q |
168 |
nnnnnntccgacaaattcggcttccccaatagctgcaccatctccgccaccgcctccctaaactccgcccctaaactctccctctc |
253 |
Q |
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|| ||||| ||||||||||| | |||||||||||||| || | | || |||||| ||||| ||||| ||||||||||| |
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| T |
42394119 |
aaaaaatctgacaagttcggcttccctatgagctgcaccatctctgctgctgtcttcctaaattccgctcctaagctctccctctc |
42394204 |
T |
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