View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18837_high_26 (Length: 262)
Name: NF18837_high_26
Description: NF18837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18837_high_26 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 23 - 235
Target Start/End: Complemental strand, 28892861 - 28892649
Alignment:
| Q |
23 |
agcaacaaaccattgttgaagaagaaaaagaagcaatgtttgggttggatagaatggctaagaggatggttcaatttattctacgaatttctattccaac |
122 |
Q |
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| T |
28892861 |
agcaacgaaccattgttgaagaagaaaaagaagcaaagtttgggttggatagaatggttaagaggatggttcaatttattctacgaatttctattccaac |
28892762 |
T |
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| Q |
123 |
gaatcctcgcaagtcatttacataaccctatgccattaccaccaatcaatgatctcacttgtattgttactggttctactagtggcattggtcttgaaat |
222 |
Q |
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||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28892761 |
gaatcacggcaagtcatttgcataatcctatgccgttaccaccaatcaatgatctcacttgtattgttactggttctactagtggcattggtcttgaaat |
28892662 |
T |
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| Q |
223 |
tgcaaggtactac |
235 |
Q |
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||||||||||||| |
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| T |
28892661 |
tgcaaggtactac |
28892649 |
T |
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