View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18837_high_31 (Length: 229)

Name: NF18837_high_31
Description: NF18837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18837_high_31
NF18837_high_31
[»] chr1 (4 HSPs)
chr1 (57-212)||(26491226-26491378)
chr1 (16-89)||(26500319-26500392)
chr1 (57-198)||(26503663-26503800)
chr1 (112-209)||(26487961-26488054)


Alignment Details
Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 57 - 212
Target Start/End: Original strand, 26491226 - 26491378
Alignment:
Q  57 aaggagcaatccattgtatgcagatttggataaggcagttcctaatgagcataagaaatttcttgcaaatttggtttgggttcatgaagaggtggtgctt 156  Q
    |||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  26491226 aaggagcaatcctttgtacgcagatttggataaggcagttcctgatgagcataagaaatttcttgcaaatttggtttgggttcatgaagaggtggtgc-- 26491323  T
Q  157 aattactttatttgcctctttgtttctatactc-atatcaaacagtccttgttttat 212  Q
      ||||||| |||||| |||||||||||| ||| |||||||||  ||||||||||||    
T  26491324 --ttactttctttgccgctttgtttctatgctctatatcaaaccatccttgttttat 26491378  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 26500319 - 26500392
Alignment:
Q  16 atgtatatggattgttgcatacataattatgacactctctaaaggagcaatccattgtatgcagatttggataa 89  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  26500319 atgtatatggattgttgcatacataactatgacactctctaaaggagcaatccattgtatgcagatttggataa 26500392  T

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Target: chr1; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 57 - 198
Target Start/End: Original strand, 26503663 - 26503800
Alignment:
Q  57 aaggagcaatccattgtatgcagatttggataaggcagttcctaatgagcataagaaatttcttgcaaatttggtttgggttcatgaagaggtggtgctt 156  Q
    |||||||| | ||||| |||||||||||| ||||||||||||| ||||||||||||||||||| || |||||||||||||| ||||||||||| |||       
T  26503663 aaggagcagttcattgcatgcagatttggttaaggcagttcctgatgagcataagaaatttctcgcgaatttggtttgggtgcatgaagaggtagtg--- 26503759  T
Q  157 aattactttatttgcctctttgtttctatactcatatcaaac 198  Q
      ||||||| ||||||||||| |||| ||| |||||||||||    
T  26503760 -tttactttctttgcctctttctttcaatagtcatatcaaac 26503800  T

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Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 26487961 - 26488054
Alignment:
Q  112 aaatttcttgcaaatttggtttgggttcatgaagaggtggtgcttaattactttatttgcctctttgtttctatactcatatcaaacagtccttgttt 209  Q
    |||||||| ||||||||||||||||||||||||||||||||||    ||||||| ||||||||||||||||||||||| ||||||||| |||||||||    
T  26487961 aaatttctcgcaaatttggtttgggttcatgaagaggtggtgc----ttactttctttgcctctttgtttctatactcttatcaaacaatccttgttt 26488054  T

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