View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18837_high_5 (Length: 433)
Name: NF18837_high_5
Description: NF18837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18837_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 35361462 - 35361046
Alignment:
| Q |
1 |
gttgggaaaactgtctggagcttggacctctaaattagtggggtttgaaatgcaaaatacataagagtattgttttacattttttaaggttcagaggggt |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| |
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| T |
35361462 |
gttgggaaaactgtatggagcttggacctctaaattagtggggtttgaaatgcaaaatacataagagtattgttttacatttttaaggtttcagaggggt |
35361363 |
T |
|
| Q |
101 |
caattgaagttgaaccctaatggcttaagatcttatactgtactcatctcaaggtctttggttcgattatctccaatgtcaatttcaatggacttgtttg |
200 |
Q |
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| T |
35361362 |
caattgaagttgaaccctaatggcttaagatcttatactgtactcatctcaaggtatttggttcgattatctctaatgtcaatttcaatggacttgtttg |
35361263 |
T |
|
| Q |
201 |
acttattgaagnnnnnnnnnntggaaccctctcaaaactcaaaaggctagcttctcccttgatcgtgtcaacaagaccacatgaatctttatttgccaca |
300 |
Q |
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| T |
35361262 |
acttattgaagaaaaaaaaatt-gaaccctctcaaaactcaaaagactagcttctcccttgattgtgtcaacaagaccacatgaatctttatttgccaca |
35361164 |
T |
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| Q |
301 |
tcatttttatttttaaatggtgtgtgtgataagtttggagactaaaaatgaaagaacgtgaaatttcaagcatatcaccttatattttttcacatgaact |
400 |
Q |
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| T |
35361163 |
taatttttatttttaaatggtgtgtgtgataagtttggagactaaaaatgaaagaacgtgaaatttcaggcatataaccttatattttttcacatgaact |
35361064 |
T |
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| Q |
401 |
aaaaatgctttttacttt |
418 |
Q |
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| T |
35361063 |
aaaaatgcttgttacttt |
35361046 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 18669310 - 18669262
Alignment:
| Q |
159 |
tggttcgattatctccaatgtcaatttcaatggacttgtttgacttatt |
207 |
Q |
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| T |
18669310 |
tggttcgattatctccagtgtcaatttcgattgactagtttgacttatt |
18669262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 27459015 - 27458971
Alignment:
| Q |
147 |
tctcaaggtctttggttcgattatctccaatgtcaatttcaatgg |
191 |
Q |
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|||||||||||| |||| ||||||||||||| ||||||||||||| |
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| T |
27459015 |
tctcaaggtcttaggtttgattatctccaatctcaatttcaatgg |
27458971 |
T |
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