View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18837_high_6 (Length: 412)
Name: NF18837_high_6
Description: NF18837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18837_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 19 - 404
Target Start/End: Complemental strand, 2402782 - 2402397
Alignment:
| Q |
19 |
atcattgtataaagaaaaccccttttggatatcaaatcattaatagtctcgttagctgtcgattaaacaccagatattattttagtgggctcgtcacgaa |
118 |
Q |
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| T |
2402782 |
atcattgtataaagaaaaccccttttggatatcaaatcattaatagtctcgttagctgtcgattaaacaccagatattattttagtgggctcgtcacgaa |
2402683 |
T |
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| Q |
119 |
tggagaatttgtctatccacttgagctatcaggttcaagttgaaggcatctctgttgatgaaatacaaaaccaaaatgctagttttgggctgagaagttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2402682 |
tggagaatttgtctatccacttgagctatcaggttcaagttgaaggcatctctgttgatgaaatacaaaaccaaaatgctagttttgggctgagaagttt |
2402583 |
T |
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| Q |
219 |
tgtcttgcactttcaatgagttgacgccacattccttggatgttttcatacatacctattttttcattttcagtccttatctctacccagatgcgtcagt |
318 |
Q |
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| T |
2402582 |
tgtcttgcactttcaatgagttgacgccacattccttggatgttttcatacatacctattttttcattttcagtccttatctctacccagatgcgtcagt |
2402483 |
T |
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| Q |
319 |
ttgagcaagtaagagcagttgttccttcgattcttaattcattgaaggttgtacatttggagacagataaagcaattgatgatgtc |
404 |
Q |
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| T |
2402482 |
ttgagcaagtaagagcagttgttccttcgattcttaattcattgaaggttgtacatttggagacagataaagcaattgatgatgtc |
2402397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 228 - 330
Target Start/End: Original strand, 4247500 - 4247601
Alignment:
| Q |
228 |
ctttcaatgagttgacgccacattccttggatgttttcatacatacctattttttcattttcagtccttatctctacccagatgcgtcagtttgagcaag |
327 |
Q |
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|||||||||| |||| |||| ||||||||||||||||||| |||||||| |||||| |||||||||||||| || | || || |||||||||| |||||| |
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| T |
4247500 |
ctttcaatgatttgatgccatattccttggatgttttcattcataccta-tttttccttttcagtccttatatccatccggaggcgtcagtttcagcaag |
4247598 |
T |
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| Q |
328 |
taa |
330 |
Q |
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||| |
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| T |
4247599 |
taa |
4247601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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