View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18837_low_10 (Length: 396)
Name: NF18837_low_10
Description: NF18837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18837_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 55067611 - 55067224
Alignment:
| Q |
1 |
ctaggtggctagggtgtatgtatctgtttttggagatgaaagagggaaggaagtggccatagctgggttgaaatcaaaagccaaatatgttcgcggtgag |
100 |
Q |
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| T |
55067611 |
ctaggtggctagggtttatgtatctgtttttggagatgaaagagggaaggaagtggccatggctgggttgaaatcaaaagccaaatatgttcgcggtgag |
55067512 |
T |
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| Q |
101 |
ttggggaggcgtatgaagttgcggttaactcctgagatacgctttttggaggatgaatcttttgagagaggaagcagggtaagaattactatatttaccg |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55067511 |
ttagggaggcgtatgaagttgcggttaactcctgagatacgctttttggaggatgaatcttttgagagaggaagcagggtaagaattactatatttaccg |
55067412 |
T |
|
| Q |
201 |
ttcttctatgttttgcaattgtaagtttgtgctgttctgtttccactttggccctttcctgaccaaccatctctcagccttctactactaaattactaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55067411 |
ttcttctatgttttgcaattgtaagtttgtgctgttctgtttccactttggccctttcctgaccaaccatctctcagccttctactactaaattactaat |
55067312 |
T |
|
| Q |
301 |
tgctaataacaaacgtccttttgctttgccacatgtcatcaattcctttatttaattaacatgctacactctctcctagtagtataat |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55067311 |
tgctaataacaaacgtccttttgctttgccacatgtcatcaattcctttatttaattaacatgctacactctctcctagtagtataat |
55067224 |
T |
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