View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18837_low_11 (Length: 388)
Name: NF18837_low_11
Description: NF18837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18837_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 19 - 374
Target Start/End: Original strand, 52761380 - 52761735
Alignment:
| Q |
19 |
tgaattaatctcaattagctcagcttcaagttctgctagtttaacctatatccatgaagaaaaattgtgttgcatggcaatgctatcttaaatgtacggt |
118 |
Q |
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| T |
52761380 |
tgaattaatctcaattagctcggcttcaagttctgctagtttaacctatatccatgaagaaaaattgtgttacatggcaatgctctcttaaatgtacggt |
52761479 |
T |
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| Q |
119 |
agaaaagatatgaaaattttaaaaacacctgacaacctccaatttttctagatcaatagaaccatctctcgttgaccatgttgacggagatatatttgcc |
218 |
Q |
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| T |
52761480 |
agaaaagatatgaaaattttaaaaacacctgacaacctccaatttttctagatcaatagaaccatctcttgttgaccatgttgacggagatatatttgcc |
52761579 |
T |
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| Q |
219 |
tttttcatttgctccttaaataaacgcaacttacgggacatttccccacatcttttaacctatttgataaaaccgtaagctttccaatctggtctagtaa |
318 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52761580 |
tttttcatttgctccttaaataaacgcaacttacgcgacatttccccacatcttttaacctatttgataaaaccgtaagctttccaatctggtctagtaa |
52761679 |
T |
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| Q |
319 |
atcagttgtgtaaaatgtctcataataaaaatgttagcagaattagatttcatgat |
374 |
Q |
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| T |
52761680 |
atcagttgtgtaaaatgtctcataataaaaatgttagcagaattagatttcatgat |
52761735 |
T |
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