View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18837_low_12 (Length: 378)
Name: NF18837_low_12
Description: NF18837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18837_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 4 - 364
Target Start/End: Original strand, 22361930 - 22362293
Alignment:
| Q |
4 |
gctcttttttgatgaggttgtgaatccaaagaactctaagggtccatttcttgcagctatttgacagaaaggaaagtatcttggtatgtagaatatgtct |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22361930 |
gctcttttttgatgaggttgtgaatccaaagaactctaagggtccatttcttgcagctatttgacagaaaggaaagtatcttggtatgtagaatatgtct |
22362029 |
T |
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| Q |
104 |
cctactttgatttctgcttccattgcattgcttccgtttggaaatagtatctgaattcttccataacctcttaatactatggtatattctgttgcacttg |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22362030 |
cctactttgatttctgcttccattgcattgcttccgtttggaaatagtatctgaattcttccataacctcttaatactatggtatactctgttgcacttg |
22362129 |
T |
|
| Q |
204 |
gattcacatgtggtgccatcattgatccctaacatacacaacgcatgaaaaagaaaagatgaataagaacc---cagcaagatcatggttaaaatatgta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
22362130 |
gattcacatgtggtgccatcattgatccctaacatacacaatgcatgaaatagaaaagatgaataagaacccagcagcaatatcatggttaaaatatgta |
22362229 |
T |
|
| Q |
301 |
aggtcttgtttgtttgcataccgcggtgagattgacgtgaaaaacaccgatatcaggtattttg |
364 |
Q |
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| T |
22362230 |
aggtcttgtttgtttgcataccgcggtgagattgacgtgaaaaacaccgatatcaggtattttg |
22362293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 20 - 233
Target Start/End: Complemental strand, 39815121 - 39814908
Alignment:
| Q |
20 |
gttgtgaatccaaagaactctaagggtccatttcttgcagctatttgacagaaaggaaagtatcttggtatgtagaatatgtctcctactttgatttctg |
119 |
Q |
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||||||||||||||||| || | ||| |||| |||| |||||||| || || | ||||||||||||||| |||| | |||||| ||| || | || |
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| T |
39815121 |
gttgtgaatccaaagaaatcaagtggttcattgcttgatgctatttggcaaaatgcaaagtatcttggtataaagaaaacatctccttgttttatatgtg |
39815022 |
T |
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| Q |
120 |
cttccattgcattgcttccgtttggaaatagtatctgaattcttccataacctcttaatactatggtatattctgttgcacttggattcacatgtggtgc |
219 |
Q |
| |
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|||||||||||| |||| |||||||| | ||| |||||||| ||| |||||||||| |||||| ||| |||||||| |||||||| ||||| |||| |
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| T |
39815021 |
tgtccattgcattggttccatttggaaacactatttgaattctaccagaacctcttaagactatgccatactctgttgcccttggatttacatggggtgt |
39814922 |
T |
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| Q |
220 |
catcattgatccct |
233 |
Q |
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|||||| ||||||| |
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| T |
39814921 |
catcatggatccct |
39814908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 122 - 233
Target Start/End: Complemental strand, 39805734 - 39805623
Alignment:
| Q |
122 |
tccattgcattgcttccgtttggaaatagtatctgaattcttccataacctcttaatactatggtatattctgttgcacttggattcacatgtggtgcca |
221 |
Q |
| |
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|||||||||||| |||| |||||||| | ||| |||||||| ||| ||||||||| |||||| ||| |||||||| |||||||| ||||| |||| || |
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| T |
39805734 |
tccattgcattggttccatttggaaacactatttgaattctaccagaacctcttatcactatgccatactctgttgcccttggatttacatggggtgtca |
39805635 |
T |
|
| Q |
222 |
tcattgatccct |
233 |
Q |
| |
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|||| ||||||| |
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| T |
39805634 |
tcatggatccct |
39805623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 122 - 233
Target Start/End: Complemental strand, 39826098 - 39825987
Alignment:
| Q |
122 |
tccattgcattgcttccgtttggaaatagtatctgaattcttccataacctcttaatactatggtatattctgttgcacttggattcacatgtggtgcca |
221 |
Q |
| |
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|||||||||||| |||| |||||||| | ||| |||||||| ||| ||||||||| |||||| ||| |||||||| |||||||| ||||| |||| || |
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| T |
39826098 |
tccattgcattggttccatttggaaacactatttgaattctaccagaacctcttatcactatgccatactctgttgcccttggatttacatggggtgtca |
39825999 |
T |
|
| Q |
222 |
tcattgatccct |
233 |
Q |
| |
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|||| ||||||| |
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| T |
39825998 |
tcatggatccct |
39825987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 122 - 233
Target Start/End: Complemental strand, 39902659 - 39902548
Alignment:
| Q |
122 |
tccattgcattgcttccgtttggaaatagtatctgaattcttccataacctcttaatactatggtatattctgttgcacttggattcacatgtggtgcca |
221 |
Q |
| |
|
|||||||||||| |||| |||||||| | ||| |||||||| ||| ||||||||| |||||| ||| |||||||| |||||||| ||||| |||| || |
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| T |
39902659 |
tccattgcattggttccatttggaaacactatttgaattctaccagaacctcttatcactatgccatactctgttgcccttggatttacatggggtgtca |
39902560 |
T |
|
| Q |
222 |
tcattgatccct |
233 |
Q |
| |
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|||| ||||||| |
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| T |
39902559 |
tcatggatccct |
39902548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 122 - 233
Target Start/End: Complemental strand, 39911117 - 39911006
Alignment:
| Q |
122 |
tccattgcattgcttccgtttggaaatagtatctgaattcttccataacctcttaatactatggtatattctgttgcacttggattcacatgtggtgcca |
221 |
Q |
| |
|
|||||||||||| |||| |||||||| | ||| |||||||| ||| ||||||||| |||||| ||| |||||||| |||||||| ||||| |||| || |
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| T |
39911117 |
tccattgcattggttccatttggaaacactatttgaattctaccagaacctcttatcactatgccatactctgttgcccttggatttacatggggtgtca |
39911018 |
T |
|
| Q |
222 |
tcattgatccct |
233 |
Q |
| |
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|||| ||||||| |
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| T |
39911017 |
tcatggatccct |
39911006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 122 - 233
Target Start/End: Complemental strand, 39922260 - 39922149
Alignment:
| Q |
122 |
tccattgcattgcttccgtttggaaatagtatctgaattcttccataacctcttaatactatggtatattctgttgcacttggattcacatgtggtgcca |
221 |
Q |
| |
|
|||||||||||| |||| |||||||| | ||| |||||||| ||| ||||||||| |||||| ||| |||||||| |||||||| ||||| |||| || |
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| T |
39922260 |
tccattgcattggttccatttggaaacactatttgaattctaccagaacctcttatcactatgccatactctgttgcccttggatttacatggggtgtca |
39922161 |
T |
|
| Q |
222 |
tcattgatccct |
233 |
Q |
| |
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|||| ||||||| |
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| T |
39922160 |
tcatggatccct |
39922149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 122 - 233
Target Start/End: Complemental strand, 39927956 - 39927845
Alignment:
| Q |
122 |
tccattgcattgcttccgtttggaaatagtatctgaattcttccataacctcttaatactatggtatattctgttgcacttggattcacatgtggtgcca |
221 |
Q |
| |
|
|||||||||||| |||| |||||||| | ||| |||||||| ||| ||||||||| |||||| ||| |||||||| |||||||| ||||| |||| || |
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| T |
39927956 |
tccattgcattggttccatttggaaacactatttgaattctaccagaacctcttatcactatgccatactctgttgcccttggatttacatggggtgtca |
39927857 |
T |
|
| Q |
222 |
tcattgatccct |
233 |
Q |
| |
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|||| ||||||| |
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|
| T |
39927856 |
tcatggatccct |
39927845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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