View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18837_low_13 (Length: 360)
Name: NF18837_low_13
Description: NF18837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18837_low_13 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 36622220 - 36621861
Alignment:
| Q |
1 |
tagatcatgtgagaaaagctaggcaaatgcaattttggtgggaaagccctgttgatgaacttggcttgaatgaattgctccagttaaaggtttctattga |
100 |
Q |
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| T |
36622220 |
tagatcatgtgagaaaagctaggcaaatgcaattttggtgggaaagccctgttgatgaacttggcttgaatgaattgctccaattaaaggtttctattga |
36622121 |
T |
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| Q |
101 |
ggacctgaggaagaatcttggaaaaattgctagcaaatgcatgatggaacaatccaatgtttcttcatcaaatattggagctaatggatttttaggtgta |
200 |
Q |
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| T |
36622120 |
ggacctcaggaagaatcttggaaaaattgctagcaaatgcatgatggaacaatccaatgtttcttcatcaaatattggagctaatggatttttaggtgta |
36622021 |
T |
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| Q |
201 |
gggattaatattgcttccccacttcctaatagctattatctaggttttcgaatttgacatctttgaacattgatttcttatggtttggctttggatccaa |
300 |
Q |
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| T |
36622020 |
gggattaatattgcttccccacttcctaatagctattatctaggttttcgaatttgacatctttgaacattgatttcttatggtttggctttggatccaa |
36621921 |
T |
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| Q |
301 |
atgagtgaatcatgcactagtacatcactagttatttgttcacttgcaatttatttgttt |
360 |
Q |
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| T |
36621920 |
atgagtgaatcatgcactagtacatcactagttatttgttcacttccaatttatttgttt |
36621861 |
T |
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