View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18837_low_16 (Length: 304)
Name: NF18837_low_16
Description: NF18837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18837_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 35361004 - 35360707
Alignment:
| Q |
1 |
tattatcgataaattgcgtttgagaccttcttacaaaataaaattaacaaatgcatattttaagtagtaatttcaagacattttgaaaattgaaacatta |
100 |
Q |
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| T |
35361004 |
tattatcgataaattgcgtttgagaccttcttacaaaataaaattaacaa-tgcatattttaagtagtaatttcaacacattttgaaaattgaaacatta |
35360906 |
T |
|
| Q |
101 |
tacatggaaaatgtttagattagaaactttggtgaaaatttgccttgtattcatgcaaaacaaacttcgtcaaagttgaggaatgtatatcgataatgta |
200 |
Q |
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| T |
35360905 |
tacatggaaaatgtttagattagaaactttggtgaaaatttgccttgtattcatgcaaaacaaacttcgtcaaagttgaggaatgtatatcgataatgta |
35360806 |
T |
|
| Q |
201 |
aacccatttgtcacaattggttaatttgtgagaatattcttcagagtttggaaaccattacgaatacttgcttcccaaactttctcaatgctaagtata |
299 |
Q |
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| T |
35360805 |
aacccatttgtcacacttggttaatttgtgagaatattcttcagaggttggaaaccatgacgaatacttgcttcccaaactttctcaatgctaagtata |
35360707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 181 - 299
Target Start/End: Complemental strand, 35373194 - 35373076
Alignment:
| Q |
181 |
gaatgtatatcgataatgtaaacccatttgtcacaattggttaatttgtgagaatattcttcagagtttggaaaccattacgaatacttgcttcccaaac |
280 |
Q |
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| T |
35373194 |
gaatgtatatcaataatgtaaacccatttgtcacacttggttaatttgtgaggatattcttcagaggttggaaaccatgacgaatacttgcttcccaaac |
35373095 |
T |
|
| Q |
281 |
tttctcaatgctaagtata |
299 |
Q |
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| T |
35373094 |
tttctcagtgctaagtata |
35373076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 35383140 - 35383079
Alignment:
| Q |
238 |
tcttcagagtttggaaaccattacgaatacttgcttcccaaactttctcaatgctaagtata |
299 |
Q |
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|||| |||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
35383140 |
tctttagaggttggaaaccatgacgaatacttgcttcccaaactttctcagtgctaagtata |
35383079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 290
Target Start/End: Original strand, 19625613 - 19625650
Alignment:
| Q |
253 |
aaccattacgaatacttgcttcccaaactttctcaatg |
290 |
Q |
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| T |
19625613 |
aaccatgacgaatacttgcttcccatactttctcaatg |
19625650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 19691260 - 19691220
Alignment:
| Q |
250 |
ggaaaccattacgaatacttgcttcccaaactttctcaatg |
290 |
Q |
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||||||||| ||||||||||||||||| |||||||||||| |
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| T |
19691260 |
ggaaaccatggcgaatacttgcttcccatactttctcaatg |
19691220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 19701845 - 19701805
Alignment:
| Q |
250 |
ggaaaccattacgaatacttgcttcccaaactttctcaatg |
290 |
Q |
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||||||||| ||||||||||||||||| |||||||||||| |
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| T |
19701845 |
ggaaaccatggcgaatacttgcttcccatactttctcaatg |
19701805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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