View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18837_low_2 (Length: 687)
Name: NF18837_low_2
Description: NF18837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18837_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 569; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 68 - 668
Target Start/End: Complemental strand, 15630021 - 15629421
Alignment:
| Q |
68 |
ttcaaaatgtaaagaatcatcatacctcgagatacatgtccattgcatggtaaagctcatcacaagaatccctagcagaatctggaagagctgtagcaag |
167 |
Q |
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| T |
15630021 |
ttcaaaatggaaagaatcattatacctcaagatacatgtccattgcatggtaaagctcatcacaagaatccctagcagaatctggaagagctgttgcaag |
15629922 |
T |
|
| Q |
168 |
agccaaaaacttcgaagtttttaaacaaggatcaggtgcaatttcagctatatacaaatctattaagctagcaactttcctcatccgaacgggagcaacg |
267 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15629921 |
agccaaaaactttgaagtttttaaacaaggatcaggtgcaatttcagctatatacaaatctattaagctagcaactttcctcatccgaacgggagcaacg |
15629822 |
T |
|
| Q |
268 |
gcaccagttccttgccgcaggaacgctttcaaaaatctcagaacaaggttcacatcatataagtagtttattccatagggagatggaacaagcaaattgt |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15629821 |
gcaccagttccttgccgcaggaacgctttcaaaaatctcagaacaaggttcacatcatataagtagtttattccatagggagatggaacaagcaaattgt |
15629722 |
T |
|
| Q |
368 |
ccaatgttacttgatccaattgtgaaccaatcataatctccaacttattcctactacatttacttatgttcaagcacaaagtcacccgaagaatcccaaa |
467 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15629721 |
ccaatgttacttgatccaattgtgaaccaatcataatctccaacttattcctactacatttacttatgttcaagcacaaagtcacccgaagaatcccaaa |
15629622 |
T |
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| Q |
468 |
taatgtcttgaacgaaacagaactccggtctatttcgtaatgcatatctatgaccatttcaatgattttgcacttctcatctgtagtagcagtggcgaat |
567 |
Q |
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|||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15629621 |
taatgttttgaaagaaacagaattccggtctatttcgtaatgcatatctatgaccatttcaatgattttgcacttctcatctgtagtagcagtggcgaat |
15629522 |
T |
|
| Q |
568 |
ttcgccttctgataatacagaagaaacctacttataacataatgatccaatttactcgaaagcattgactttaccaacatgataaccatctggggagtca |
667 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15629521 |
ttcgccttctgataatacagaagaaacctacttataacataatgatccaatttactcgaaagcattgactttaccaacatgataaccatctggggagtca |
15629422 |
T |
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| Q |
668 |
a |
668 |
Q |
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| T |
15629421 |
a |
15629421 |
T |
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