View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18837_low_3 (Length: 638)

Name: NF18837_low_3
Description: NF18837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18837_low_3
NF18837_low_3
[»] chr3 (11 HSPs)
chr3 (215-625)||(47874194-47874604)
chr3 (20-147)||(47874668-47874795)
chr3 (38-104)||(50652386-50652453)
chr3 (22-92)||(7204-7274)
chr3 (22-92)||(29525244-29525314)
chr3 (27-92)||(37710415-37710480)
chr3 (22-106)||(36869827-36869912)
chr3 (28-92)||(1402661-1402725)
chr3 (28-103)||(9027612-9027688)
chr3 (36-92)||(27198164-27198220)
chr3 (28-92)||(30664514-30664578)
[»] chr1 (7 HSPs)
chr1 (233-313)||(4665732-4665812)
chr1 (28-104)||(2854956-2855033)
chr1 (27-92)||(40238449-40238514)
chr1 (17-92)||(26839393-26839466)
chr1 (48-92)||(31184292-31184336)
chr1 (55-91)||(39067682-39067718)
chr1 (28-92)||(44672026-44672090)
[»] scaffold0003 (1 HSPs)
scaffold0003 (22-108)||(337112-337199)
[»] chr5 (9 HSPs)
chr5 (36-92)||(17063876-17063932)
chr5 (37-92)||(27440490-27440545)
chr5 (36-88)||(41460131-41460183)
chr5 (38-92)||(26685502-26685556)
chr5 (38-92)||(26955233-26955287)
chr5 (22-106)||(11880977-11881062)
chr5 (36-92)||(3960173-3960229)
chr5 (36-92)||(18638829-18638885)
chr5 (36-92)||(34400629-34400685)
[»] chr4 (8 HSPs)
chr4 (22-105)||(34259812-34259896)
chr4 (36-92)||(8906467-8906523)
chr4 (36-92)||(11012152-11012208)
chr4 (36-92)||(41609683-41609739)
chr4 (36-103)||(8455860-8455928)
chr4 (36-92)||(23220346-23220402)
chr4 (36-92)||(36444399-36444455)
chr4 (28-92)||(39881026-39881090)
[»] chr8 (3 HSPs)
chr8 (28-106)||(36064026-36064105)
chr8 (38-92)||(6806919-6806973)
chr8 (36-92)||(41406860-41406916)
[»] chr7 (9 HSPs)
chr7 (36-92)||(27070673-27070728)
chr7 (36-92)||(27207585-27207640)
chr7 (36-92)||(37392054-37392110)
chr7 (22-90)||(44187704-44187772)
chr7 (36-106)||(46148162-46148233)
chr7 (36-90)||(5978592-5978646)
chr7 (37-106)||(13437194-13437264)
chr7 (22-92)||(29034112-29034182)
chr7 (36-104)||(22692082-22692151)
[»] chr2 (5 HSPs)
chr2 (27-92)||(6742405-6742470)
chr2 (27-92)||(43621943-43622008)
chr2 (24-92)||(4842512-4842580)
chr2 (28-92)||(29168736-29168800)
chr2 (61-108)||(43820770-43820818)
[»] scaffold0020 (1 HSPs)
scaffold0020 (36-92)||(155917-155973)
[»] chr6 (1 HSPs)
chr6 (28-92)||(21506347-21506411)


Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 215 - 625
Target Start/End: Complemental strand, 47874604 - 47874194
Alignment:
Q  215 gaagaatttgaagatatataccggattgagagtagaatgatctttgaaggtgtcctccaagactgcagattgttctttggtaagcctaagtttcttccta 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47874604 gaagaatttgaagatatataccggattgagagtagaatgatctttgaaggtgtcctccaagactgcagattgttctttggtaagcctaagtttcttccta 47874505  T
Q  315 atggggttatcatttacatcatcaacatcaacaaatgaaatcttctctggctcatgtacttcatttctctccctcttgatgctattagaggagttggaaa 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  47874504 atggggttatcatttacatcatcaacatcaacaaatgaaatcttctctggctcatggacttcatttctctccctcttgatgctattagaggagttggaaa 47874405  T
Q  415 atgaagacatcacgctagtagaattagaggcacgttgatgcaaattataaataaactcatccgattcagtctttgttgtagtagctacttgatgatgaat 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  47874404 atgaagacatcacgctagtagaattagaggcacgttgatgcaaattataaataaaatcatccgattcagtctttgttgtagtagctacttgatgatgaat 47874305  T
Q  515 atttctctcatcaatattatcagcagctgatccaactcctaacgtaagagaatatggctctaccttattacatggatcctcctcctcttcctccttaatc 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47874304 atttctctcatcaatattatcagcagctgatccaactcctaacgtaagagaatatggctctaccttattacatggatcctcctcctcttcctccttaatc 47874205  T
Q  615 ttcttgctttg 625  Q
    |||||||||||    
T  47874204 ttcttgctttg 47874194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 47874795 - 47874668
Alignment:
Q  20 atagagggtaagaaggtaatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaaaacatttctctattatgtagtagggtt 119  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  47874795 atagagggtaagaaggtaatatgagtacgagagataaaatttttcaaaagttgtcataaaatggttgtacaaaaacatttctctattatgtagtagggtt 47874696  T
Q  120 aattacgaccttttgaatttagtccata 147  Q
    |||||| |||||||||||||||||||||    
T  47874695 aattacaaccttttgaatttagtccata 47874668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 50652453 - 50652386
Alignment:
Q  38 atgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa-aacatttctcta 104  Q
    ||||||||| |||| |||||||| | ||||||||||||||||||| ||||||||| | ||||||||||    
T  50652453 atgtgagtatgagatataaatttatccaaaagttgtcataaaatggttgtacaaatatcatttctcta 50652386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 7204 - 7274
Alignment:
Q  22 agagggtaagaaggtaatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa 92  Q
    ||||| ||||||  ||||||||||| |||||| ||| || | |||||||||||| ||||||||||||||||    
T  7204 agaggataagaatataatgtgagtatgagagagaaagttgtccaaaagttgtcagaaaatgattgtacaaa 7274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 29525314 - 29525244
Alignment:
Q  22 agagggtaagaaggtaatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa 92  Q
    ||||| ||||||| ||||||||||| |||||| ||  || | |||||||||||||||||||| ||||||||    
T  29525314 agaggataagaagataatgtgagtatgagagagaatattgtacaaaagttgtcataaaatgaatgtacaaa 29525244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 37710480 - 37710415
Alignment:
Q  27 gtaagaaggtaatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa 92  Q
    |||||||| ||||||||||| |||||| ||  || |||||||||||||| | ||||||||||||||    
T  37710480 gtaagaagataatgtgagtatgagagagaatcttgttcaaaagttgtcacagaatgattgtacaaa 37710415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 36869827 - 36869912
Alignment:
Q  22 agagggtaagaaggtaatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa-aacatttctctatt 106  Q
    |||| |||||||  ||||||||||| |||||| ||| || |  ||||||||||| |||||| ||||||||| | ||||||||||||    
T  36869827 agagagtaagaatataatgtgagtatgagagagaaagttgtctaaaagttgtcaaaaaatggttgtacaaatatcatttctctatt 36869912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 1402725 - 1402661
Alignment:
Q  28 taagaaggtaatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa 92  Q
    ||||||| ||||||||||| |||||| ||  || | |||||||||||||||||||  ||||||||    
T  1402725 taagaagataatgtgagtatgagagagaaggttgtacaaaagttgtcataaaatggatgtacaaa 1402661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 9027688 - 9027612
Alignment:
Q  28 taagaaggtaatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa-aacatttctct 103  Q
    ||||||| |||||||||||  ||||||||| || | ||||||||||   |||||| ||||||||| |||||||||||    
T  9027688 taagaagataatgtgagtatcagagataaagttgtacaaaagttgtataaaaatggttgtacaaataacatttctct 9027612  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 27198164 - 27198220
Alignment:
Q  36 taatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa 92  Q
    |||| |||||| |||||||||| || || ||||||| ||| ||||||||||||||||    
T  27198164 taatatgagtatgagagataaaattgtttaaaagttatcaaaaaatgattgtacaaa 27198220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 30664578 - 30664514
Alignment:
Q  28 taagaaggtaatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa 92  Q
    ||||||| ||||||||||| |||||| ||| || | ||||||||||   ||||||||||||||||    
T  30664578 taagaagataatgtgagtatgagagagaaagttgtacaaaagttgtacaaaaatgattgtacaaa 30664514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 233 - 313
Target Start/End: Original strand, 4665732 - 4665812
Alignment:
Q  233 taccggattgagagtagaatgatctttgaaggtgtcctccaagactgcagattgttctttggtaagcctaagtttcttcct 313  Q
    ||||||||| ||||||||||| ||| ||||| | |||||||| ||| | ||||||||||| || |||||||||||||||||    
T  4665732 taccggattaagagtagaatgctctctgaagttttcctccaaaacttctgattgttcttttgtgagcctaagtttcttcct 4665812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 2854956 - 2855033
Alignment:
Q  28 taagaaggtaatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa-aacatttctcta 104  Q
    ||||||| ||||||||||| |||||| ||  || | |||||||||||||||||||| |||||||| | ||||||||||    
T  2854956 taagaagataatgtgagtatgagagaaaagattgtacaaaagttgtcataaaatgaatgtacaaatatcatttctcta 2855033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 40238514 - 40238449
Alignment:
Q  27 gtaagaaggtaatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa 92  Q
    |||||||  |||||||| || |||||| ||| || || ||||||||||| ||||||||||||||||    
T  40238514 gtaagaatataatgtgaatatgagagaaaaaattgtttaaaagttgtcaaaaaatgattgtacaaa 40238449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 26839466 - 26839393
Alignment:
Q  17 aatatagagggtaagaaggtaatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa 92  Q
    |||| ||||||||||||  ||||||||||| |||||  ||| || | |||||||| |||||||||| |||||||||    
T  26839466 aatagagagggtaagaatataatgtgagtatgagag--aaagttgtacaaaagttatcataaaatggttgtacaaa 26839393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 31184336 - 31184292
Alignment:
Q  48 gagagataaattttttcaaaagttgtcataaaatgattgtacaaa 92  Q
    |||||||||| || || |||||||||||||||||| |||||||||    
T  31184336 gagagataaagttgttaaaaagttgtcataaaatggttgtacaaa 31184292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 55 - 91
Target Start/End: Original strand, 39067682 - 39067718
Alignment:
Q  55 aaattttttcaaaagttgtcataaaatgattgtacaa 91  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  39067682 aaattatttcaaaagttgtcataaaattattgtacaa 39067718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 44672026 - 44672090
Alignment:
Q  28 taagaaggtaatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa 92  Q
    ||||||| ||||||||||| |||||| ||| || |  ||||||||| | ||||||||||||||||    
T  44672026 taagaagataatgtgagtatgagagagaaaattgtcaaaaagttgttaaaaaatgattgtacaaa 44672090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 337199 - 337112
Alignment:
Q  22 agagggtaagaaggtaatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa-aacatttctctattat 108  Q
    |||| |||||||  ||||||||||| |||||| ||| || |||||||||||||| |||||| ||||||||| | ||||||||||||||    
T  337199 agagagtaagaatataatgtgagtatgagagagaaagttattcaaaagttgtcagaaaatggttgtacaaatatcatttctctattat 337112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 17063932 - 17063876
Alignment:
Q  36 taatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa 92  Q
    ||||||||||| |||||||||| || || ||||||||||| ||||||||||||||||    
T  17063932 taatgtgagtatgagagataaagttgtttaaaagttgtcaaaaaatgattgtacaaa 17063876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 37 - 92
Target Start/End: Complemental strand, 27440545 - 27440490
Alignment:
Q  37 aatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa 92  Q
    |||||||||| |||||| ||| || |||||||||||||| ||||||||||||||||    
T  27440545 aatgtgagtatgagagagaaaattgttcaaaagttgtcacaaaatgattgtacaaa 27440490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 41460183 - 41460131
Alignment:
Q  36 taatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgta 88  Q
    ||||||||||| |||||||||| || || ||||||||||| ||||||||||||    
T  41460183 taatgtgagtatgagagataaagttgtttaaaagttgtcaaaaaatgattgta 41460131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 26685502 - 26685556
Alignment:
Q  38 atgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa 92  Q
    ||||||||| |||||| ||| || |||||||||||||| |||||| |||||||||    
T  26685502 atgtgagtatgagagagaaaattattcaaaagttgtcacaaaatggttgtacaaa 26685556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 26955233 - 26955287
Alignment:
Q  38 atgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa 92  Q
    ||||||||| |||||| ||| || |||||||||||||| |||||| |||||||||    
T  26955233 atgtgagtatgagagagaaaattattcaaaagttgtcacaaaatggttgtacaaa 26955287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 11880977 - 11881062
Alignment:
Q  22 agagggtaagaaggtaatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa-aacatttctctatt 106  Q
    |||| |||||||| ||||||||||| |||||| ||| || |  ||||||||| | ||||| |||||||||| | ||||||||||||    
T  11880977 agagagtaagaagataatgtgagtatgagagagaaagttgtctaaaagttgttaaaaaataattgtacaaatatcatttctctatt 11881062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 3960173 - 3960229
Alignment:
Q  36 taatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa 92  Q
    ||||||||||| |||| ||||| || || ||||||||||| ||||||||| ||||||    
T  3960173 taatgtgagtatgagatataaagttgtttaaaagttgtcaaaaaatgattatacaaa 3960229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 18638829 - 18638885
Alignment:
Q  36 taatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa 92  Q
    ||||||||||| ||||||||||||| |  ||||||||| |||||||| |||| ||||    
T  18638829 taatgtgagtatgagagataaatttgtcaaaaagttgtaataaaatggttgtgcaaa 18638885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 34400685 - 34400629
Alignment:
Q  36 taatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa 92  Q
    ||||||||||| |||||| ||  || || |||| |||||||||||||||||||||||    
T  34400685 taatgtgagtatgagagagaaggttgttaaaaaattgtcataaaatgattgtacaaa 34400629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 34259896 - 34259812
Alignment:
Q  22 agagggtaagaaggtaatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa-aacatttctctat 105  Q
    |||| |||||||| ||||||||||| |||||| ||| || ||||| |||||||| |||||| ||||||||| | |||||||||||    
T  34259896 agagagtaagaagataatgtgagtatgagagagaaagttgttcaacagttgtcacaaaatggttgtacaaatatcatttctctat 34259812  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 8906467 - 8906523
Alignment:
Q  36 taatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa 92  Q
    ||||||||||| |||||||||| || |||||||||||||| ||| || |||||||||    
T  8906467 taatgtgagtatgagagataaaattgttcaaaagttgtcagaaagtggttgtacaaa 8906523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 11012208 - 11012152
Alignment:
Q  36 taatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa 92  Q
    |||||| |||| |||||||||| || || |||||||||||||||||| |||||||||    
T  11012208 taatgtaagtatgagagataaagttgttaaaaagttgtcataaaatggttgtacaaa 11012152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 41609683 - 41609739
Alignment:
Q  36 taatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa 92  Q
    ||||||||||| |||||||||| || | |||||||||||||||||||  ||||||||    
T  41609683 taatgtgagtatgagagataaagttgtacaaaagttgtcataaaatggatgtacaaa 41609739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 8455928 - 8455860
Alignment:
Q  36 taatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa-aacatttctct 103  Q
    |||||||||||  ||||| ||| || |||||||||||||| |||||  ||||||||| |||||||||||    
T  8455928 taatgtgagtattagagagaaagttgttcaaaagttgtcacaaaatagttgtacaaataacatttctct 8455860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 23220402 - 23220346
Alignment:
Q  36 taatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa 92  Q
    |||||||||||  ||||||||| || || ||||||||||| |||||| |||||||||    
T  23220402 taatgtgagtataagagataaagttatttaaaagttgtcaaaaaatggttgtacaaa 23220346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 36444399 - 36444455
Alignment:
Q  36 taatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa 92  Q
    ||||||||||| |||||| ||| || || ||||||| |||||||||| |||||||||    
T  36444399 taatgtgagtatgagagagaaagttgttaaaaagttatcataaaatggttgtacaaa 36444455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 39881026 - 39881090
Alignment:
Q  28 taagaaggtaatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa 92  Q
    ||||||| ||||||||||| |||||| ||| || |  ||||||||| | ||||||||||||||||    
T  39881026 taagaagataatgtgagtatgagagagaaagttgtcaaaaagttgttagaaaatgattgtacaaa 39881090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 36064105 - 36064026
Alignment:
Q  28 taagaaggtaatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa-aacatttctctatt 106  Q
    |||||| || ||||||||| |||||| ||| || | |||||||||||| |||||||||||||||| | ||||||||||||    
T  36064105 taagaatgtcatgtgagtatgagagagaaaattgtccaaaagttgtcacaaaatgattgtacaaatatcatttctctatt 36064026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 6806973 - 6806919
Alignment:
Q  38 atgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa 92  Q
    ||||||||| |||||| ||| || || ||||||||||| ||||||||||||||||    
T  6806973 atgtgagtatgagagaaaaaattgtttaaaagttgtcacaaaatgattgtacaaa 6806919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 41406860 - 41406916
Alignment:
Q  36 taatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa 92  Q
    ||||||||||| |||||| ||| || || |||| |||||| ||||||||||||||||    
T  41406860 taatgtgagtatgagagagaaagttgttaaaaaattgtcaaaaaatgattgtacaaa 41406916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 27070673 - 27070728
Alignment:
Q  36 taatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa 92  Q
    |||||||||||||||||| ||| || | |||||||||| ||||||||||||||||||    
T  27070673 taatgtgagtacgagagagaaagttgt-caaaagttgtaataaaatgattgtacaaa 27070728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 27207640 - 27207585
Alignment:
Q  36 taatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa 92  Q
    |||||||||||||||||| ||| || | |||||||||| ||||||||||||||||||    
T  27207640 taatgtgagtacgagagagaaagttgt-caaaagttgtaataaaatgattgtacaaa 27207585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 37392110 - 37392054
Alignment:
Q  36 taatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa 92  Q
    ||||||||||| |||||||||| || || ||||||||||| |||||| |||||||||    
T  37392110 taatgtgagtatgagagataaagttgtttaaaagttgtcaaaaaatggttgtacaaa 37392054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 44187772 - 44187704
Alignment:
Q  22 agagggtaagaaggtaatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtaca 90  Q
    |||| |||||||  ||||||||||| |||| ||||| || || ||||||||||| ||||||||||||||    
T  44187772 agagagtaagaatataatgtgagtatgagaaataaagttgtttaaaagttgtcaaaaaatgattgtaca 44187704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 46148233 - 46148162
Alignment:
Q  36 taatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa-aacatttctctatt 106  Q
    ||||||||||| |||||||||| || ||  |||||||||| ||||||||| |||||| | ||||||||||||    
T  46148233 taatgtgagtatgagagataaacttgtttcaaagttgtcaaaaaatgattttacaaatatcatttctctatt 46148162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 5978646 - 5978592
Alignment:
Q  36 taatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtaca 90  Q
    ||||||||||| || ||| ||| || || ||||||||||||||||||||||||||    
T  5978646 taatgtgagtatgaaagagaaaattgttaaaaagttgtcataaaatgattgtaca 5978592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 13437264 - 13437194
Alignment:
Q  37 aatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa-aacatttctctatt 106  Q
    |||||||||| |||||| ||| || |||||||||||||| |||||| |||| |||| | ||||||||||||    
T  13437264 aatgtgagtatgagagaaaaagttgttcaaaagttgtcacaaaatggttgtgcaaatatcatttctctatt 13437194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 29034182 - 29034112
Alignment:
Q  22 agagggtaagaaggtaatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa 92  Q
    ||||||||||||  ||||||||||| |||||| ||| || |  |||| |||||| ||||||||||||||||    
T  29034182 agagggtaagaatataatgtgagtatgagagagaaaattatcaaaaaattgtcacaaaatgattgtacaaa 29034112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 104
Target Start/End: Complemental strand, 22692151 - 22692082
Alignment:
Q  36 taatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa-aacatttctcta 104  Q
    |||||| |||| |||||| ||| || || |||||||||||||||||| ||||||||| | ||||||||||    
T  22692151 taatgtaagtatgagagagaaaattgtttaaaagttgtcataaaatggttgtacaaatatcatttctcta 22692082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 6742405 - 6742470
Alignment:
Q  27 gtaagaaggtaatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa 92  Q
    |||||||| |||||||| || || ||| ||| || |||||||||||||| ||||||||| ||||||    
T  6742405 gtaagaagataatgtgaatatgaaagagaaagttgttcaaaagttgtcacaaaatgattttacaaa 6742470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 43621943 - 43622008
Alignment:
Q  27 gtaagaaggtaatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa 92  Q
    |||||||| ||| || |||| |||||| ||| || ||||||||||||||||||||  |||||||||    
T  43621943 gtaagaagataacgtaagtatgagagagaaagttgttcaaaagttgtcataaaatagttgtacaaa 43622008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 4842512 - 4842580
Alignment:
Q  24 agggtaagaaggtaatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa 92  Q
    ||||||||||  ||||||||||| |||||| ||| || |  ||||||||||| ||| ||||||||||||    
T  4842512 agggtaagaatataatgtgagtatgagagagaaagttgtctaaaagttgtcacaaagtgattgtacaaa 4842580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 29168800 - 29168736
Alignment:
Q  28 taagaaggtaatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa 92  Q
    |||||| || ||||||||| |||||| ||| || | |||||||||||| |||||| |||||||||    
T  29168800 taagaatgtcatgtgagtatgagagagaaagttgtgcaaaagttgtcaaaaaatggttgtacaaa 29168736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 43820770 - 43820818
Alignment:
Q  61 tttcaaaagttgtcataaaatgattgtacaaa-aacatttctctattat 108  Q
    ||||||||||||| | |||||||||||||||| | ||||||||||||||    
T  43820770 tttcaaaagttgtaaaaaaatgattgtacaaatatcatttctctattat 43820818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 155973 - 155917
Alignment:
Q  36 taatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa 92  Q
    |||||||||||||||||| ||| || |  ||||||||| |||||||| |||||||||    
T  155973 taatgtgagtacgagagagaaagttgtcaaaaagttgtaataaaatggttgtacaaa 155917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 21506411 - 21506347
Alignment:
Q  28 taagaaggtaatgtgagtacgagagataaattttttcaaaagttgtcataaaatgattgtacaaa 92  Q
    ||||||| ||||||||||| |||||| ||| || |  ||||||||||| |||||| |||||||||    
T  21506411 taagaagataatgtgagtatgagagagaaagttgtcaaaaagttgtcaaaaaatggttgtacaaa 21506347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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