View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18837_low_4 (Length: 609)
Name: NF18837_low_4
Description: NF18837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18837_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 187 - 598
Target Start/End: Original strand, 50525089 - 50525501
Alignment:
| Q |
187 |
gaagcttttcagatggtgtagtttgttggagttgattcaagatttgactgtatcagtatagttgaaagttggtggttaaaaagtgagacccagtctcagt |
286 |
Q |
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| T |
50525089 |
gaagcttttcagatggtgtagtttgttggagttgattcaagatttgactgtata--tatagttgaaagttggtggttaaaaagtgagacccagtctcagt |
50525186 |
T |
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| Q |
287 |
ttcttacatggatatatattatccaaccctaccattagtctatcgtagtcccaagattcttagaagcttatacttttttatacctttcnnnnnnnnnnnn |
386 |
Q |
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| T |
50525187 |
ttcttacatggatatatattatccaaccctaccattagtctatcgtagtcccaagattcttagaagcttatacttttttatacctttc-aaaaaaaaaaa |
50525285 |
T |
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| Q |
387 |
tcttaatttctctatcaatattttgtcctt---------attattattatacggcaacacatttgaaaaggccttagtggaccaaataattgtcaccaca |
477 |
Q |
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| T |
50525286 |
tcttaatttctctatcaatattttgtccttattattatcattattattatacggcaacacagttgaaaaggccttagtggaccaaataattgtcaccaca |
50525385 |
T |
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| Q |
478 |
taaactaaaccaaaattttgttgagatttttcttggtagggttcatgcatctcaaaacacaatcgtcaaccaaaaattcaaaagtacaggtgtggttgac |
577 |
Q |
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| T |
50525386 |
-----taaaccaaaattttgttgagatttttcttggtagggttcatgcatctcaaaacacaatcgtcaaccaaaaattcaaaagtataggtgtggttgac |
50525480 |
T |
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| Q |
578 |
cttggccaatttattaatatt |
598 |
Q |
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| T |
50525481 |
cttggccaatttattaatatt |
50525501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 50524902 - 50525060
Alignment:
| Q |
17 |
agtaatagcattatataaccaagaaatgttatataagtgtccatgcagacaaccttatttaatatgtctaattcggacaacatcagatctctaacctaat |
116 |
Q |
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| T |
50524902 |
agtaatagcattatataaccaaaaaatgttatataagtgtccttgaacacaaccttatttaatatgtctaattcggataacatcaggtctctaacctgat |
50525001 |
T |
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| Q |
117 |
atcggtaaaaa--atagtctttaaataaatcttagtcagtgagaacaccgtagtttaac |
173 |
Q |
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| T |
50525002 |
atcggtaaaaaatatagtctttaaataaatcttagttagggagaacaccttagtttaac |
50525060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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