View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18837_low_5 (Length: 453)
Name: NF18837_low_5
Description: NF18837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18837_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 42763047 - 42763348
Alignment:
| Q |
1 |
atatcaaagacaattaaattggttttattatgtattataatccaaatcatggtgatatactaagctcaatttaaacttgtatatcttctgaagcttaaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42763047 |
atatcaaagacaattaaattggttttattatgtattataatccaaatcatggttatatactaagctcaatttaaacttgtatatcttctgaagcttaaac |
42763146 |
T |
|
| Q |
101 |
gtttaccatcataatttgtaaagattagtttttaaaaaaccatagcaaattctgaatgatttaatgtcgttacaagaaaagacctattgcagtgaaagtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
42763147 |
gtttaccatcataatttgtaaagattagtttttaaaaaaccatagcaaattctaaatgatttaatgtcgttacaaggaaagacctgttgcagtgaaagtt |
42763246 |
T |
|
| Q |
201 |
atctggatttcctttagtaacttgacagattccacgccacttttttgggatcagtccaaatccttcgtcactaaaactcttggattctggccaaacacct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42763247 |
atctggatttcctttagtaacttgacagattccacgccacttttttgggatcagtccaaatccttcgtcactaaaactcttggattctggccaaacacct |
42763346 |
T |
|
| Q |
301 |
gt |
302 |
Q |
| |
|
|| |
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|
| T |
42763347 |
gt |
42763348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 42734440 - 42734310
Alignment:
| Q |
1 |
atatcaaagacaattaaattggttttattatgtattataatccaaatcatggtgatatactaagctcaatttaaacttgtatatcttctgaagcttaaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||| ||||||| |
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| T |
42734440 |
atatcaaagacaattaaattggttttattatgtattataatccaaatcatggtgatatactaagctcaatttaaacttgcatatatggtgaatcttaaac |
42734341 |
T |
|
| Q |
101 |
gtttaccatcataatttgtaaagattagttt |
131 |
Q |
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||||| |||||||||||||||||||||||| |
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|
| T |
42734340 |
atttactatcataatttgtaaagattagttt |
42734310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 179 - 300
Target Start/End: Complemental strand, 42733546 - 42733425
Alignment:
| Q |
179 |
aagacctattgcagtgaaagttatctggatttcctttagtaacttgacagattccacgccacttttttgggatcagtccaaatccttcgtcactaaaact |
278 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| |||||| |||||||||| ||||||||||| ||||| ||||| | ||||||||||| ||||||||||| |
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| T |
42733546 |
aagacctgttgcaatgaaagttatctggattgcctttaataacttgacaaattccacgccattttttggggattggcccaaatccttcatcactaaaact |
42733447 |
T |
|
| Q |
279 |
cttggattctggccaaacacct |
300 |
Q |
| |
|
||| |||||||||||||||||| |
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| T |
42733446 |
ctttgattctggccaaacacct |
42733425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 368 - 436
Target Start/End: Original strand, 42763414 - 42763482
Alignment:
| Q |
368 |
tatactatataattaagcaatcaatcatatttcaaccgaagataattttagatttcaactcaagatatt |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42763414 |
tatactatataattaagcaatcaatcatatttcaaccgaagataattttagatttcaactcaagatatt |
42763482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 180 - 302
Target Start/End: Original strand, 42744182 - 42744304
Alignment:
| Q |
180 |
agacctattgcagtgaaagttatctggatttcctttagtaacttgacagattccacgccacttttttgggatcagtccaaatccttcgtcactaaaactc |
279 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||| |||||| ||||| |||||||||| || || | ||| ||||||| |||||||||||| |
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| T |
42744182 |
agacctgttgcagtgaaagttatcgggatttcctttagtagtttgacaagttccatgccactttttaggaattggaccatatccttcatcactaaaactc |
42744281 |
T |
|
| Q |
280 |
ttggattctggccaaacacctgt |
302 |
Q |
| |
|
|| |||||||||||||||||||| |
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| T |
42744282 |
ttagattctggccaaacacctgt |
42744304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 180 - 302
Target Start/End: Original strand, 42753541 - 42753663
Alignment:
| Q |
180 |
agacctattgcagtgaaagttatctggatttcctttagtaacttgacagattccacgccacttttttgggatcagtccaaatccttcgtcactaaaactc |
279 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||| |||||| ||||| |||||||||| || || | ||| ||||||| |||||||||||| |
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| T |
42753541 |
agacctgttgcagtgaaagttatcgggatttcctttagtagtttgacaagttccatgccactttttaggaattggaccatatccttcatcactaaaactc |
42753640 |
T |
|
| Q |
280 |
ttggattctggccaaacacctgt |
302 |
Q |
| |
|
|| |||||||||||||||||||| |
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| T |
42753641 |
ttagattctggccaaacacctgt |
42753663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 182 - 300
Target Start/End: Original strand, 42717552 - 42717670
Alignment:
| Q |
182 |
acctattgcagtgaaagttatctggatttcctttagtaacttgacagattccacgccacttttttgggatcagtccaaatccttcgtcactaaaactctt |
281 |
Q |
| |
|
|||| |||||| ||| |||||| ||||| |||| ||||||||| |||||| |||| ||||||||||| |||| | ||||| ||||| |||||||| |
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| T |
42717552 |
acctgttgcagaaaaatttatcttgattttgtttatcaacttgacaaattccatgccatttttttgggattggtcccatcccttcatcactgaaactctt |
42717651 |
T |
|
| Q |
282 |
ggattctggccaaacacct |
300 |
Q |
| |
|
|||||| |||||||||||| |
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|
| T |
42717652 |
ggattcaggccaaacacct |
42717670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 177 - 302
Target Start/End: Complemental strand, 23039921 - 23039796
Alignment:
| Q |
177 |
aaaagacctattgcagtgaaagttatctggatttcctttagtaacttgacagattccacgccacttttttgggatcagtccaaatccttcgtcactaaaa |
276 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||| | |||||| ||||| |||||||||| ||||| | ||| ||||||| ||| ||||| |
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| T |
23039921 |
aaaagacctgttgcagtgaaagttatctggattccctttagcagtttgacaagttccatgccactttttagggattggaccatatccttcatcattaaaa |
23039822 |
T |
|
| Q |
277 |
ctcttggattctggccaaacacctgt |
302 |
Q |
| |
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||||| |||||||||||||||||||| |
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|
| T |
23039821 |
ctcttagattctggccaaacacctgt |
23039796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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