View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18837_low_8 (Length: 410)
Name: NF18837_low_8
Description: NF18837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18837_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 101 - 402
Target Start/End: Original strand, 45646540 - 45646841
Alignment:
| Q |
101 |
cataagaattcatatttaattcaccccttgttnnnnnnnnttaaacttttacgagggagatttctataatgtactaaatattacttcaaaaataaattca |
200 |
Q |
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| T |
45646540 |
cataagaattcatatttaattcaccccttgttaaaaaaaattaaacttttgcgagggagatttctataatgtactaaatattacttcaaaaataaattca |
45646639 |
T |
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| Q |
201 |
aaattttgaaagatactgataagttgacttaaaacaaaactttagagggactaaaaacaacttgatatctttataaagatcagaaatttatttaaccctt |
300 |
Q |
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| T |
45646640 |
aaattttgaaagataatgataagttgacttaaaacaaaactttagagggactaaaaacaacttgatatctttataaagatcagaaacttatttaaccctt |
45646739 |
T |
|
| Q |
301 |
aaaactattttattttagttaaatctcgtgtaagcttgcagtttaaaatggtcaaactaaatcaatacatacatttttaagaattaattcaattagtata |
400 |
Q |
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| T |
45646740 |
aaaactattttattttagttaaatctcgtgtaagcttgcagtttaaaatggtcaaacaaaatcaatgcatacatttttaagaattaattcaattagtata |
45646839 |
T |
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| Q |
401 |
at |
402 |
Q |
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|| |
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| T |
45646840 |
at |
45646841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 215
Target Start/End: Original strand, 33472570 - 33472644
Alignment:
| Q |
141 |
ttaaacttttacgagggagatttctataatgtactaaatattacttcaaaaataaattcaaaattttgaaagata |
215 |
Q |
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| T |
33472570 |
ttaaacttttactagaaagatttctataacgtaataaacatgactgcaaaaattaattcaaaattttgaaggata |
33472644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 17259825 - 17259884
Alignment:
| Q |
157 |
gagatttctataatgtactaaatattacttcaaaaataaattcaaaattttgaaagatac |
216 |
Q |
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| T |
17259825 |
gagatttctataatgtactaaacaaaactacaaaaaacaatttaaaattttgaaagatac |
17259884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 41513023 - 41512983
Alignment:
| Q |
141 |
ttaaacttttacgagggagatttctataatgtactaaatat |
181 |
Q |
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| T |
41513023 |
ttaaaattttacgagagagaattctataatgtactaaatat |
41512983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 33230517 - 33230582
Alignment:
| Q |
141 |
ttaaacttttacgagggagatttctataatgtactaaatattacttcaaaaataaattcaaaattt |
206 |
Q |
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| T |
33230517 |
ttaaacttttactagagagatttatataatgtattaaataagactccaaaaaataattcaaaattt |
33230582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 233
Target Start/End: Original strand, 14538191 - 14538267
Alignment:
| Q |
157 |
gagatttctataatgtactaaatattacttcaaaaataaattcaaaattttgaaagatactgataagttgacttaaa |
233 |
Q |
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||||||| ||||||||||||| || ||| ||||| ||||||||||||||||||| ||| |||||| ||||||| |
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| T |
14538191 |
gagattttcataatgtactaaacatgactggaaaaaaaaattcaaaattttgaaagctacacgtaagtttacttaaa |
14538267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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